KEGG   Camelina sativa (false flax): 104725655
Entry
104725655         CDS       T05044                                 
Name
(RefSeq) E3 ubiquitin protein ligase RIN3 isoform X1
  KO
K10636  E3 ubiquitin-protein ligase AMFR [EC:2.3.2.36]
Organism
csat  Camelina sativa (false flax)
Pathway
csat04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    104725655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:csat04121]
    104725655
Enzymes [BR:csat01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.36  RING-type E3 ubiquitin transferase (cysteine targeting)
     104725655
Ubiquitin system [BR:csat04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    104725655
  Multi subunit Ring-finger type E3
   ERAD complex
    104725655
   LMBR1L-GP78-UBAC2 complex
    104725655
SSDB
Motif
Pfam: zf-RING_2 CUE zf-C3HC4 zf-rbx1 zf-RING_UBOX zf-ANAPC11 zf-C3HC4_3 zf-C3HC4_2 zf-RING_11 zf-C3HC4_4 Endonuclease_7 zf-RING_16 zf-RING_5 zf-HC5HC2H RINGv E3_UbLigase_EDD PHD FANCL_C
Other DBs
NCBI-GeneID: 104725655
NCBI-ProteinID: XP_010442644
Position
11:39821715..39826416
AA seq 580 aa
MGIRYLHISVATTALSFVGLQVWSELSLDRHRADGLITKNVSLGDSDDALELLLGSHITI
SLLTSFVLNVYILLVLYLKTLFFGDLYAIETKKLVERLANYIIYKLVGTFLPLVVPPTVF
QGVLWTIWLTVLCTLKMFQALARDRLERLNASPSSTPWTYFRVYSALFMVLSAVLFWIRL
SLMIYNRIGSSLYLLLLFEPCSVAFETLQALLIHGFQLLDMWINHLAVKNSDCERSKFLD
SMTAGSLLEWKGLLNRNLGFFLDMATLVMALGHYFHIWWLHGMAFHMVDAVLFLNIRALL
SAILKRIKGYIKLRVALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCNHLFHL
GCLRSWLDQGLNEVYSCPTCRKPLFVGRTENEANPSREEVLRDEQLARQFERQNSSVHAR
TTGMFPTETPNSTESDPWRNSGLDSSWLQTWSDQGVDVAGPSAGSRSVGLGQVQMMMRHL
ASVGEGYAQNALDDASWGLWPMNPSQVSIPSSNVPPAGGGRTGGLHLRTVSRAENNMASI
PAMFETVREVLPHVPDEIIFQDLQRTNSAAVTVNNLLQMS
NT seq 1743 nt   +upstreamnt  +downstreamnt
atggggataagatatctgcacatatctgtggcaacaacagctttgagctttgtgggttta
caagtgtggagtgagttgtctcttgatagacatagagctgatggtttgatcaccaagaac
gtttctttaggagattctgatgatgcccttgagcttcttctgggttctcacattactatt
tccttgctgacaagttttgtgctcaatgtctacattcttcttgttctttatctcaagact
ttgtttttcggggatctatatgccattgaaactaaaaagctggtggaaagacttgccaat
tacatcatttacaagctagtgggcacttttctgccgttggtggttccaccaactgtattt
cagggggtcctatggacaatatggttgactgttctatgtactcttaagatgtttcaagct
ttggctagagatcggcttgaacgattgaatgcatctccttcttctactccttggacatac
tttcgtgtgtattcagcgctgttcatggttctctctgctgttttgttctggataaggctt
tcccttatgatatacaatagaattggttcatctctgtatttgttgttactttttgagcca
tgcagtgtagcttttgagaccttgcaggcattgttgattcacgggtttcaactccttgat
atgtggattaaccacttagcagtcaagaattcagattgcgaaagatcaaagtttcttgat
tctatgacagcaggctcattattggaatggaaaggcctacttaaccggaatcttggtttc
tttctagacatggctaccttggtaatggcccttggtcattattttcacatctggtggctc
catggaatggcctttcatatggtggacgcagttttgtttctcaacatacgtgccctgtta
agtgcaattttgaaacggataaaaggatacattaaactgcgagtagctttaggtgctctt
catgcagctcttcctgatgcaacttcggaagagctgcgggcatatgatgacgaatgtgct
atatgtcgggaaccaatggctaaggctaaaagacttcactgcaaccacctttttcatctt
ggatgcttgcgatcatggttggatcaaggtttaaatgaggtttactcttgtcctacatgt
cgtaagccactttttgttggtagaactgaaaatgaggcgaatcctagcagagaagaagtc
ttaagagatgaacagttagcccgtcaatttgagagacaaaacagttctgtgcatgcacga
accactgggatgtttccaaccgagacgccaaattccactgaaagtgatccttggaggaat
tcaggactggactcaagctggttacaaacatggtcagatcagggtgttgatgtcgcgggt
ccctctgcaggctccagatccgttggactggggcaggttcaaatgatgatgagacatctt
gcatctgttggggaaggttatgctcagaatgcacttgacgatgcttcttggggtctctgg
ccaatgaatccttcgcaagtatcgattccatcttcaaatgttcctcctgctggtggtgga
agaacaggtggtctgcatctgagaactgtctctcgtgcagaaaataacatggcgagtata
ccagctatgtttgagacagtgagagaagtcctgccacatgtgcctgatgaaataattttc
caggacctgcaaagaacaaattccgctgctgtcacagtgaacaatcttctccagatgtca
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (18)   
   Pfam (18)   
All databases (34)   

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