KEGG   Camelina sativa (false flax): 104734036
Entry
104734036         CDS       T05044                                 
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    104734036
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csat03400]
    104734036
Enzymes [BR:csat01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104734036
DNA repair and recombination proteins [BR:csat03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     104734036
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C PTCB-BRCT RNA_ligase DNA_ligase_IV
Other DBs
NCBI-GeneID: 104734036
NCBI-ProteinID: XP_010451850
Position
2:complement(23495233..23502579)
AA seq 1225 aa
MTESIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLTIKELNDLLDRLATSENRGEKTSVLSTLIQKTNAQEMKWVIRIILKDLKLGMSER
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW
KKLHGKDVIAECKFDGDRIQIHKNGTEIHYYSRNFLDHSEYVHAMSDLIVQNILVDKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKER
HELLKKVVRPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGI
VLKDLESKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALADR
AEANVYPRRFLSFCRVGTGLSDEELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP
DVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESESTHDNPKVTKSSRRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMI
FYFVNVLRSYSVDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFS
WILDCCSRNKMLPLQPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQS
EDSKSIEYYKKKLCPEKRWSCLFGCCVYFYPYSQTLSTEEEALLAIMAKRLALEVLMGGG
KVSNNLAHASHLVVLAITEDSLDFTSVSKNFSEVEKRLLLKRRLHVVNSHWLEDSLQREQ
KLCEDVYTLRPKYMEESDTEESDKSEHDTAEVASCGSVQTEEPASSKMEIRSSRGRSSTR
AVKRGRSSTNSTHRVQRRRGKQPSKIGGDEKEESDASEERVSTRLSDIAEESDSFGGAQR
NSSRGESAKRGKSRVGQTQRVQRSRRGKKASKIGGDESEEHDGFDDMDNVSADALESNAA
GRSVENEEIREPNIAKHRESLHKENIVAVEEASEDSRNAKTEMGMREKLQIHEDPLQAML
MNMIPSLSQKNTETSNRITGENRYTNVFNDCESSEKRKLSAETGNTSVNAGADADADAEA
DTVPPPVKKKKVSYRDVAGELLKDW
NT seq 3678 nt   +upstreamnt  +downstreamnt
atgacggaatcgatcaaattcagcgtactagtatctctcttcaactggatccaaaaaagc
aaaacctcatctcagaaacgctccaagttccgcaagtttctcgacacttactgcaaaccc
tcagactacttcgtcgcagtacgactcatcatcccgtcgcttgatagggaacgaggtagc
tacggtctcaaggagtcagtgctcgccacgtgtctgatcgacgcgcttggtatctctcgt
gacgctcctgacgctgttcgtcttctcaattggcgtaaaggaggaaccgctaaagctggt
gccaatgctggaaacttttctttaattgctgctgaggttttgcaacgtagacaaggtatg
gcttcaggtggtttgactattaaggaattgaatgatttgcttgatcgtttggctactagt
gagaacagaggggagaagacttctgttctttctactctgattcagaagacaaatgctcag
gagatgaagtgggtcattaggataattttaaaagatttgaaactgggaatgagcgagagg
agtatatttcatgagttccatccagatgctgaggacttgtttaatgttacgtgtgacttg
aaactagtttgtgaaaagttgagggatcgacaccaacggcataagcgccaggatatagag
gtaggaaaagccgtacggcctcagttagctatgcgtatcagtgatgtaaatgctgcttgg
aagaagctacatgggaaagatgtaattgctgaatgcaaatttgatggggatcgcatacaa
atacacaaaaatgggactgagatacactattactctaggaacttccttgaccattctgaa
tacgtgcatgccatgtcggatcttattgtacaaaatatattggtggacaagtgcatcctt
gatggggaaatgttggtctgggatacatctctgaatcggtttgctgagtttggttcaaat
caggaaatagccaaggcagcaagggaaggtcttgacagccatagacagttgtgttatgtt
gcctttgatgttctttatgttggcgatactagcgtcatccaccagagtttgaaggaacgg
catgaactgctgaaaaaagtggtcaggcctttaaaaggtcgtctagaagttttagtacct
gaaggtggtctcaatgttcaccgcccttcaggggaacctagttggtctattgttgttcat
gctgctgctgatgttgagagatttttcaaagaaacagttgaaaacagagatgaaggaatt
gtgcttaaagacctggaatcaaaatgggaacctggagatcgtagtggcaagtggttgaag
ttgaagcctgaatatatccgggctggttctgaccttgatgttcttataataggaggatac
tatggctccggacgtcgtggaggggaggtagcacagtttctcgtcgccttggctgaccgg
gcagaggctaatgtgtatcccaggcgatttctgtccttttgtagagttggcactggactt
tctgatgaagaacttaacactgttgtaagcaaactgaagccttatttcagaaaaaatgaa
cacccaaagaaggctccaccaagcttctatcaggtcacaaatcactcaaaagagagacca
gatgtttggattgaaagcccagagaaatcaataatactttcaatcactagtgatatcagg
acaataaggtctgaggtgtttgttgcaccttacagtctgaggtttcctcgtattgataaa
gtaagatatgacaagccttggcatgaatgtctcgatgtgcaggcttttgtggaattggtg
aactctagtaatggcaccacacagaaacagaaggaatctgaaagcacacatgacaatccg
aaagttactaaatcctccaggagaggagagaaaaagaatgtgtctcttgtcccttctcag
tttattcaaactgatgtatcggatatcaagggcaagacatcaatcttctcaaatatgata
ttttattttgttaatgtgctccggtcttattctgttgatacatttcacaaaatggtggtt
gagaatggaggaaagttctcaatgaacttaaacaactcagtgactcattgcattgcagcg
gaaagcagtggaataaagtatcaggcagcaaagcgtcagcgagatgtcatccacttttca
tggatcttagattgttgttcacgaaataagatgcttcctttgcagccaaagtacttcctc
cacctcactgatgcttcaaggaccaaattacaggatgacattgatgaattttcggattct
tattactgggatttagaccttgaaggtctcaaacaggtcttaagcaatgccaagcaatcc
gaagactcaaaatccattgaatactacaagaaaaagttatgtccagagaaaagatggtcc
tgcctctttggctgctgtgtttatttttacccgtatagtcaaacattgagcactgaagag
gaagctctgttggcaattatggctaagagattagcgcttgaagttttaatgggtggtggt
aaagttagcaataatcttgctcatgcgtcgcaccttgtagtccttgctataacagaagac
tctttggatttcacttcagtttcaaaaaatttcagcgaagtggagaagcgccttttgttg
aagagaaggctacacgttgttaactctcactggttagaagacagcttgcaaagagagcag
aaactttgcgaggacgtctacactctgaggcctaagtatatggaagagtctgatactgaa
gaatcagataaatctgaacatgatacagcggaagtagcttcctgtggtagtgttcaaacc
gaagagccagcttcctctaaaatggaaattaggagttcaagaggacggtcaagtactcga
gctgttaaaaggggaaggtcttctacaaactcaacgcatcgagtacagagacgcagaggc
aagcagccttctaagataggcggggacgaaaaagaggagagcgatgcttctgaagaaagg
gtttcaacaagactcagtgatatagcagaagagtcagattcgttcggtggggctcaaaga
aactctagcagaggagaatctgcaaagagaggaaagtctcgtgtaggacaaacccaaaga
gtacagagatcacgaagaggcaagaaggcttcgaagattggaggagatgagtctgaggaa
catgatggttttgatgacatggacaatgtgtcagcagatgcattagagagtaatgcagcc
ggtagatcagtggaaaacgaagaaatccgagagcctaacatagcaaagcacagagaatca
ctgcataaagagaacatagtagcagttgaagaggcctcagaagattctagaaatgcaaag
accgagatgggtatgagagagaaattacaaatccacgaggatccactacaagctatgtta
atgaacatgatcccgagcctcagtcagaaaaacacagagacatcaaaccgtatcactggg
gaaaatagatacactaatgtttttaatgattgtgagtcttcagagaaaaggaaactcagc
gccgagactggtaatacttctgtaaacgcaggcgcagacgcagacgcagacgcagaggca
gacacagttcctcctcctgtgaagaaaaagaaagtcagctaccgggatgttgccggagaa
ctgctcaaagactggtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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