KEGG   Camelina sativa (false flax): 104744575
Entry
104744575         CDS       T05044                                 
Name
(RefSeq) protein CLP1 homolog isoform X1
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104744575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104744575
Enzymes [BR:csat01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     104744575
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     104744575
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N nSTAND3 CbiA ATP_bind_1 GTP_EFTU AAA_22 AAA_21 SRPRB AAA_24 LRIF1
Other DBs
NCBI-GeneID: 104744575
NCBI-ProteinID: XP_010463952
Position
15:complement(1516512..1519476)
AA seq 452 aa
MAYGGPSMNPPAMMTTGAVPGSGNLKQVKLERESELRIEVSEEPLRLRLVNGTAEIFGSE
LPPEIWRTFPPRLKFAVFTWYGATIEMDGVTETDYTADETPMVSYINVHAILDARRRLAK
ASTSNEPESSQGPRVIVVGPVDSGKSTLTKMLLSWAAKQGWKPTFVDLDVGQGSITIPGS
IAATPIEMPLDPVEGFTLDMALVYYYGHITPSGSSSANIELYKTLVKELAQVLERQFVGN
PESRAAGMVINTMGWIEGPGYELLLHAIDTFNASVVLVLGQEKLFSRLKDFLSRSKSNVD
VVKLHKSGGVVARAREFRQSSRNSRIQEYFYGLSKELSPYANTSSFSDLQVFRIGGGPQA
PMSALPIGSDRVSNPLRVTPVNIDNRDLLHSVLAVSYAEEPDQIVSSNVSGFVYVTEVDI
PRKKITYLAPSPGTLPSKFLIAGSLSWLESTK
NT seq 1359 nt   +upstreamnt  +downstreamnt
atggcttacggtggtccgtcaatgaatccaccggctatgatgactactggcgcagttccc
gggtctggtaatctgaagcaagtgaaattagagagagaaagcgagcttaggattgaagtc
tctgaggagcctctcagactccgtttggtcaacgggaccgctgagattttcggctctgaa
ctgcctcctgaaatctggcgtaccttccctcctcgcctcaaatttgcggttttcacatgg
tatggagcgacaattgagatggatggtgtcacggaaactgactatacagcagatgagaca
ccgatggtcagctacattaatgtgcacgcaatactagatgctaggagacgtttggccaaa
gcttccacatccaatgaaccagaatcttctcagggacctcgggttattgtagtagggcct
gtcgattccgggaagagcacgttgacaaagatgcttcttagttgggcagctaaacaagga
tggaaacctacatttgtagaccttgatgttggccaagggtcaattacaataccgggttcg
attgctgctacacctattgaaatgccactggatccagttgaagggtttactcttgatatg
gcccttgtatactactacggccacataacacctagtggctcttccagtgccaacattgaa
ctgtacaaaactctggtgaaagagcttgctcaagttctggagagacagtttgtaggaaac
cctgaatctcgagctgctggaatggtgatcaacacaatgggatggatcgagggtccgggt
tacgagctgcttctacatgcaatagacacattcaacgcctctgttgtactagtattgggt
caggaaaaactattcagcaggcttaaagacttccttagtagaagtaagagtaatgttgac
gtcgtgaaacttcacaagtctggtggagttgtagctagggccagagagttccggcaaagt
tcaagaaattctaggattcaggaatatttttacggtctatccaaagaactctctccgtat
gccaatacatcaagtttcagtgatctgcaagtgttcagaattggtggtggaccacaagct
ccaatgtcagctctgccaatcgggtctgaccgggtttcaaatccgttgagggtgacgcct
gtaaatattgataaccgggatctgctgcattctgttctggctgtctcatacgctgaagaa
ccagaccagattgtctcaagcaatgtttctgggtttgtgtatgtgacggaagttgatata
ccgaggaagaagataacgtatttagcaccatcgccagggacattacctagcaagttcttg
atcgctggatctttgtcatggcttgagtcaacgaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (12)   
   Pfam (12)   
All databases (32)   

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