KEGG   Camelina sativa (false flax): 104746943
Entry
104746943         CDS       T05044                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2 isoform X1
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104746943
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csat03021]
    104746943
Enzymes [BR:csat01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104746943
Transcription machinery [BR:csat03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     104746943
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 CFAP77
Other DBs
NCBI-GeneID: 104746943
NCBI-ProteinID: XP_010466795
Position
15:16230691..16238184
AA seq 1175 aa
MDIDDEIEAAGEINLSELGESFLQSFCKKAATSFFENYGLISHQLNSYDFFIKHGLQNVF
DSFGEMLVEPSFDISKKKADDWRYATVRFGLVTVEMPTFFSDEKELQFLPWHARLQNMTY
SARIKVNVQVEVPPQSSLSGNEVFTKSVVKSDKFKTGQDDYVEKKILDVKKQDILIGRIP
VMVKSVLCNTSVQGKENCNKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSPWTV
SFRSETKRNRFIVRLAENLKSEDYKRREKVLTVYFLSTEIPVWLMFFALGVSSDKEAMDL
IAFDGDDANITNSLIASIHEADAICEAFRCGNNALAYVEQQIKSTKFPPLESVDDCLRLY
LFPGLQGLKKKARFLGYMVKCLLSAYAGKRNCENRDSFRNKRIELAGELLEREIRVHLAH
ARRTMTKNMQKHLAGDGDLKPIEHYLDASIITNGLTRAFSTGAWSHPFRKMERVSGVVAN
LGRANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLL
GLVSTQTLEPVVEKLFDCGMEELMDDTSTPLCGKHKVLFNGDWIGLCSDSEYFVAELKSR
RRRSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPKQYSFEHLLDQG
ILELIGIEEEEDCNTAWGIKQLLKEPNNYTHCELDLSFLLGVSCAIVPFANHDHGRRVLY
QSQKHCQQAIGFSSTNPNTRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVN
VHLGYNQEDSIVMNKASLERGMFRSEQIRSYKSEVDSKDSEKRKKMDEVVQFGKTHSKIG
KVDSLDDDGFPIIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNF
ASVSLRQVRSPCLGDKFSSMHGQKGVLGYVEEQENFPFTIQGIVPDIVINPHAFPSRQTP
GQLLEAALSKGIASPIQKEGSSAAYTKLTRHATPFSTPSVSEITEQLHRAGFSRWGNERV
YNGRTGEMMRSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE
MERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCE
SPDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC
NT seq 3528 nt   +upstreamnt  +downstreamnt
atggacattgatgatgagatcgaggctgctggggagatcaatctttctgagctaggagaa
agttttctccagagtttctgcaaaaaagctgcaacatccttctttgaaaactatggactt
ataagtcatcagctcaactcctacgacttcttcatcaaacacgggcttcagaatgtgttt
gattcctttggtgagatgctcgttgaaccgtcttttgatatttcaaagaagaaggccgat
gattggagatacgctactgttagattcggactagtcaccgtcgagatgcccacattcttt
tctgatgaaaaggagcttcagtttctcccatggcatgccaggcttcagaacatgacttac
tcagcaaggatcaaagtaaatgtccaagttgaggtcccaccacaatcttctttgtctgga
aatgaagtgttcacaaaaagtgttgttaaaagtgacaaattcaagaccggacaagacgat
tatgtcgagaagaagatactagatgtcaaaaagcaggacattctaattggtagaatacct
gtcatggtgaagtctgtcctttgcaatacaagcgtgcaaggaaaggaaaactgcaataag
ggggattgtgcctttgatcagggtggatactttgtgataaagggggctgagaaggtgttt
atagctcaggaacagatgtgcacaaagagactgtggatttctaattcaccatggacagtc
tccttcaggtccgaaactaaaagaaatcggttcattgtgcgtctcgcagagaatctgaaa
tcagaagactataagagaagggagaaagtactgacagtgtacttcttgtcgactgagatt
ccagtctggcttatgttctttgcgctgggtgtttcgtcagacaaagaagccatggattta
attgctttcgatggtgatgatgcaaacattaccaacagtctcatagcttctatccatgaa
gctgatgcaatttgtgaagcttttcgctgtgggaacaatgctctagcatatgttgaacag
cagattaaaagcaccaagttccctcctcttgaaagtgtggatgactgcctccgcctgtat
ttgtttccaggcctccaaggtttgaagaagaaagcccgtttcctgggctatatggtaaag
tgccttctcagcgcatatgcggggaaaagaaactgtgaaaacagggatagtttccggaac
aagcgaattgagctcgctggagaactgttggagcgggagataagggtgcatctggcacat
gctagaagaaccatgaccaagaacatgcagaaacacctcgcaggcgatggtgatttgaag
cctattgagcattatttggatgcttccattatcacaaatgggcttactagagccttctcc
actggagcatggtctcatcctttcaggaagatggaaagggtttcaggtgttgtagctaat
ctgggtcgtgcaaatccattgcagactctgattgatctgaggagaacgcgacagcaagtc
ctatataccggcaaggttggagatgctagatatccgcatccgtctcactggggcagagta
tgctttttatcaactccagatggtgaaaattgtggtcttgtgaagaacatgtctcttctt
ggacttgttagcactcaaactttggagcctgtggtggaaaagctctttgattgtggaatg
gaagagctgatggatgataccagcacaccattgtgtggcaaacataaagttcttttcaat
ggagactggattggattatgttcagattctgaatactttgtcgcggagttaaagagcagg
cggcgccgaagtgaattacctcgtgagatggaaattaaacgagataaagatgacaatgag
gtgagaattttcactgacgctggtagactactccgacctctcttggttgtggaaaatctt
cacaagttgaagcaagacaaaccgaaacagtattcttttgagcatcttcttgaccaaggg
attcttgagttgatcgggattgaagaagaagaagactgtaatacagcatggggaatcaaa
cagcttctgaaggaaccaaataattacacgcattgcgaattagacttgtcattcctgttg
ggtgtgagctgtgcaattgtcccatttgcaaaccacgatcatgggagaagagttctctac
cagtcccagaagcattgccaacaagccattggtttctcatcaacgaaccctaacacccgc
tgcgatacactgtcccagcagctgttctatccccagaagccacttttcaagacattggcg
tcggagtgtcttaaaaaagaagtgctgtttaatggccagaacgcaattgttgctgtgaat
gttcatctcgggtacaaccaagaggattccattgtgatgaacaaggcttcactggaacgt
ggtatgttccgttcagagcagattagaagctacaaatcagaggttgatagcaaagactcg
gagaagaggaagaagatggatgaggttgttcagtttggaaagacacacagcaaaatcggc
aaagtagacagccttgatgatgacgggtttcctatcattggtgctaacatgagcactggc
gatattgtcattggcagatgcaccgagtctggggctgatcacagtataaagctcaagcac
actgagagaggaattgtgcaaaaagtggtattgtcatctaatgatgaggggaagaatttt
gcttcggtttctctgagacaggttcgttctccatgccttggagataagttttctagtatg
catgggcagaaaggtgttttaggctatgtagaggaacaggagaattttcctttcacgatc
caaggcatagttcctgatattgtgataaacccgcacgctttcccttctaggcaaacaccg
ggtcaactcttggaggctgcgctctccaaaggaatcgctagtcctatacaaaaggagggt
agctctgctgcatacaccaaattgacacgtcatgctactcctttctccactccgagtgtc
agtgaaatcactgagcagcttcacagggctggcttttcaagatggggaaacgaaagggta
tacaacggtagaactggtgagatgatgcgttctctgatattcatgggcccaacgttctac
cagcgacttgtccacatgtcagaggacaaagtaaagttcaggaacaccggaccagtccac
ccgctcacacggcaaccagtggcagataggaagaggttcggcggaataaagtttggagaa
atggagcgagactgcctaatagctcatggtgcttccgcgaatttgcatgagcgtctcttc
actctgagtgactcttctcagatgcacatctgcagaaaatgcaagacctatgcgaacgtg
atcgagaggactccaagcagtggaagaaagatcagagggccttactgcagagtgtgcgaa
tccccagaccatgtggttagggtgtatgtgccttatggagctaagcttctgtgtcaggag
ctgttcagcatggggatcactctcaacttcgacaccaagctctgctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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