KEGG   Camelina sativa (false flax): 104758274
Entry
104758274         CDS       T05044                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X3
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
csat  Camelina sativa (false flax)
Pathway
csat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104758274
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104758274
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104758274
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     104758274
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT WEF-hand vATP-synt_E DMPK_coil COQ7
Other DBs
NCBI-GeneID: 104758274
NCBI-ProteinID: XP_010479417
Position
3:complement(45434..59580)
AA seq 2380 aa
MLMIPSKVAGHTRFLLQSLHDSDADSIAKELSQLFDFGVETSIPVLKTCLDCFTVRKSQP
DTLLQLEKVVSLVFKRVMKLPNLGTLLSHALKDVELTQSFLDDLTDTLEFSVSDKIAFAL
ALTVFDRLDAKTTGRNFLLAEIEQLCANTGQIDSSEQIQNVLLFLQSSEDLSRHLDSFLQ
ILSYAQPSDDFSFALTPILSDVHEADVFRSMGFHCDSAENEFDAILAEIDKETGVGDLMG
ELGCGFTADAQQCKEILSSFAPLREATISRILVNVARTCADLEDNHTTFSTFSLALGSCI
PSEPPTPKSWNVDILVDTINLLAPGTSWRKVIENLDHDGFDIPNMECFAFFMRLYKTACK
EPFPLDAVCASVWKNMEGQLSFLKHAISAPPEVFTFMHSPRKLVYNDNMHSHEQQLGLSN
HAWLSLDLLDVLCQLAERGHAVLVSSLLQYPLTHCPRTLLLGMTHIKTAYNLIQREVVSA
IFPVIITNSQESGFILNIWHQNAELFLWGILGAQNLKADSMLRIIEICHELKILPVVLES
VPVSFSIRLAVLASLRGLLDIESWLPNCLHVFKDLFAEECLKFVKNVHFSDSEDFTAKHF
HPSDPLSDLHLDATTSLLKVLKAHDNVITSSQLVEEIEKVNAAILDCNSKLQNGEAKDSS
ASNAYGDDVEAEANAYFHQMFSSQLSVDAMVQMLSRYKDSLVQREKLIFECMIANLFEEY
RFFPKYPERQLKIASILFGSVIKHQLISSLTLGMALRLVLDSLRKPADSKMFLFGSKALE
QFVNRLVELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASVSHPAPSQSS
PGNGELSGSSTGQSALQHSSPIQLQQQNEVHIDDRSNVLPSNDARPLLPSLSTTSADVSV
IPRNPGISTSSSTSSGLGRQTRGATSTRFGSALNIETLVAAAERRENAIETPLQNVQDKV
SFIINNLSIANIESKGKEFADILPQQYYPWFAQYMVMKRASIEQNFHDLYLKFLDKVDSK
LLFKEILQNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDPKS
LIVEAYEKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKF
DIEVLFKNLGVDIKEVAPTSLLKDRKREIDGNPDFSNKDLISQPQMISEPKTVSPLKQID
LPLDVANSPNTDVPSKLLSQYVAPQRVYPNTLMEEEKVATLGLSDQLPSPQGLFQSTPSP
LFSISQLSAALPNIGNHVVINQKLSGFGMHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIA
CQTTKELVLKDYSMEPEESRIYNAAHLMVASLAGSLAHVTCKEPLRTSISGHLRNSLQGL
NIANESLEQIVQLVTNDNLDLGCAAIEHAATDKAIQTIDADIAQQLLLRRKHRDGAGSSF
FDPNMLSQNSVSFIPESLRPKPGHLSLSQQRVYEDFVQHPWQKQSTQTSHGLSAASSSSS
DVALGSGYGPVSGKVASDFLSSAGNARMDMVSRPSDISVDGFESSVSLLSPQVDPAGDSA
SLQFAKSLPTSELNLVEPSDAAMKEIGTSLQTLTSAATMERVGGTNITQPSLSTRDALDK
YQIVTQKMEELVANNAGDDEIQAVVSEVPEIILRCISRDEAAFAVAQKAFKALYENASSN
LHVSANLAILVAIRDVCKRVVKELTSWVIYSEEERKLNKDITIGLIQRELLSLAEYNVHM
AKHLDGGRNKSATDFAISLLQSLVTEESSVISELHSLVDALAKLASKSGSPESLQQLIDI
IRNPVTNSAGLSDSATGNEYNDRQKDEKVACNTTSNTDVNTSLDYVESDPAGFRDRVSTL
FESWYQICELPGANETACSQYVLHLHQTGLLKGDDTTESFFRTLLEISVAHCISSEEISS
GAVQSPQQAQSPSFLAIDMYAKLVFSILKYFPEQEYNSKLFLLSEIMAVTVRCIQKDAED
KKTSLNPKPYFRLFINWLLDLCSLDPGTDGANFQVLTAFANTFHALQPLKIPAFSFAWLE
LVSHRSFMPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVHFLYKGTLRVLLV
LLHDFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEA
PCILSEVDAALKGKQMKNDVDEYLMSRQQNSTFLSELKQKLLLSSSEATSAGTRYSVPLI
NSLVLYTGMQAIQQLQAGETQAQNVVALQMFKYLSMKLDTEGRYLFLNAIANQLRYPNNH
THYFSFIMLYLFFESDQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWKQ
AFIRCAPEIEKLFESVARSCGGLKPVDEGMVSGWVSDNSH
NT seq 7143 nt   +upstreamnt  +downstreamnt
atgctgatgattccttccaaggtcgccggtcatacccggttcttgctccagagccttcat
gattccgatgccgactccatcgccaaagagctttctcagttgtttgattttggagtggag
actagtattccagttctcaagacctgcttagattgcttcaccgtccggaaaagccagcca
gatacgctgttacagcttgagaaagtagtatccttagtgtttaaacgtgtgatgaaattg
ccgaatcttggaaccctgctctctcacgccctgaaagatgttgagcttactcagtcattt
ctggatgatttgactgatactttggaattttcagtctctgacaaaattgcctttgctctg
gccctcaccgtttttgatagattggatgcaaagacaactggacgcaactttttattggcc
gagattgagcaactctgtgccaataccggccagattgattcatctgagcaaattcagaat
gttctcttgtttctccagagttctgaggatctttccaggcatttggattccttcttacag
attttgtcttatgctcaacctagtgatgatttctcttttgctctcacacctatcctctcc
gacgttcatgaagctgatgttttcaggagcatgggttttcactgtgattctgctgaaaac
gagtttgatgctatcttagctgaaatcgataaggaaacaggtgttggagatctcatggga
gaattaggttgtggattcactgctgatgcccaacaatgcaaagagatcttgtctagtttt
gcaccgttaagagaggctactatctcaagaattcttgtcaatgttgctcggacatgtgct
gatcttgaagataatcacaccaccttttcaacattcagtttagcccttggttcctgcatt
ccatctgagcctcccacgccaaagtcgtggaatgttgatattctagttgatacaatcaat
ctgcttgctcctggcacaagctggaggaaagtaatcgagaatcttgatcatgatggattt
gacatccctaatatggagtgtttcgcgtttttcatgcggctctataaaaccgcttgcaag
gagccatttcctcttgatgctgtatgtgcgtctgtctggaagaatatggaaggtcaatta
tcctttcttaagcatgcaatatctgccccaccagaagttttcacctttatgcattctcca
aggaagctggtatataatgataacatgcacagccatgagcaacagttaggactatccaat
catgcatggctgtcgctggatctcttggatgttctatgccaattggccgagagaggtcat
gctgttttggttagttcgttgctccagtatccactcacacattgtcctagaaccttgctt
cttggaatgacacacatcaaaactgcttataatctcatccagcgagaagtggtttctgct
atttttccagtcataataacgaattcccaggagagtggttttatccttaatatctggcat
cagaatgcagaactctttctgtgggggattttaggtgcccaaaatcttaaagcagacagc
atgctccgaataattgaaatctgccatgagctaaagattctccctgttgtcttagaatca
gttccagtctcgttcagtatcagattggcagtccttgcatcattgagaggtcttttggac
attgagagctggttgccaaactgcctacatgtgtttaaggacctctttgctgaggagtgt
ctcaaatttgtcaagaatgtgcatttcagcgactcagaggattttaccgccaaacatttt
cacccttctgatccgttatcagatcttcatctggatgcaacaacttctcttttgaaagtt
ttgaaagctcatgataatgtgattacttcatctcaactggtcgaggagatagaaaaggtc
aatgccgcaattttggattgtaattcgaaactgcagaatggcgaggctaaagattcatca
gcttccaatgcatatggagatgatgttgaggcagaagcaaacgcttatttccatcaaatg
ttttctagtcagttgagtgttgatgcgatggttcaaatgctttctcgatacaaggactct
ttagttcaaagggaaaaattaatttttgaatgcatgatcgctaatctgtttgaagaatat
cgttttttccccaagtatcctgagagacagctgaaaatagcctccatcctctttggttct
gttataaagcaccagcttataagttccctcactctggggatggccctgcgtctagtcttg
gattctttgcgtaaacctgcagattcaaaaatgtttctctttggaagcaaggctctagaa
cagttcgtgaaccgtctggttgaattgcctcaatactgcaaccatattctgcaaatatcg
catctgcgtagcactcaccctgagttagtcactgttattgaacaagcactttcaaggata
tcatctggtaatttagagtccgatgcctctgtttcacaccctgctccctcgcagtcttcc
cctggaaatggcgagttgagtggttctagcactggccaatctgcattacagcattcttct
cccatacagcttcaacagcaaaatgaagtgcatattgatgaccgcagcaatgtgctgcca
tctaatgacgcaaggccacttctgccatcgttatcaaccacttcggctgatgtttctgtc
attccaaggaatcctggcatttcaacgtcttcttcaacctcatctggtcttggtcgtcaa
actcgtggagctacttcgacaaggtttgggtctgctttgaacatagaaaccttggttgca
gcagctgaaagaagagaaaacgcaatcgagactccactgcagaatgttcaggataaagtt
tctttcataatcaataatctctctatagcaaacattgaatcgaaagggaaagagtttgct
gatattttacctcaacagtattatccttggtttgcacagtacatggttatgaaaagagcg
agcatcgagcaaaattttcatgatctgtacctgaagttcttggataaagttgattcgaag
ttgttatttaaggagatacttcaaaatacttatgaaaattgcaaggttcttttgggttca
gagctcataaagtcaagttctgaagagcgatctcttcttaaaaatttaggcagttggctt
ggaaagttgaccattggaaggaattatgttttaagagcgcgagaaatagatccaaaatcc
ttgattgtggaggcatatgaaaaagggttgatgattgcggtcattccatttacttcaaag
gttctggagccatgccaaaacagtattgcgtatcagccgcccaatccttggacgatggct
atacttgggttgctcgctgagatttattcaatgccaaacctaaaaatgaatctgaagttt
gacatagaggttttattcaagaaccttggcgttgatataaaagaagtagcgccaacttcc
cttctaaaggaccggaagagagaaatagatgggaatcctgattttagtaacaaagatctt
atctctcagccgcagatgatatcagagcctaaaacagtttctcctcttaagcaaatagac
ctacctcttgatgttgcaaattctccgaatacagacgttccctcgaagttattatcacag
tatgtagcccctcaacgtgtttatcctaatactttgatggaagaggaaaaagtggcaact
ctaggtttgtctgatcagctgccgtcacctcaaggactgttccagtcaactccgtccccg
ttgttttctatcagtcagttgtcagcagcacttcccaacattggaaatcatgttgttatt
aatcagaagttgagcggatttggtatgcactttccatttcagagagtggtaccacttgcc
atggacagagctatcaaggagattgtgtctggtattgtgcagcgaagtgtttgtattgca
tgccaaacaacaaaagaacttgtgctgaaggattattccatggaacccgaagaatcacgt
atttataatgcagctcacttgatggttgcgagtttagctgggagtttggctcatgtgaca
tgcaaggaacccttgcgtacttcaatatccggtcatctacggaattctctccagggtctg
aatattgcaaatgaatctcttgaacaaattgtgcaacttgtcaccaatgacaatcttgat
ttgggttgtgcggctattgaacatgcggctacagataaggcaatacaaacaattgatgcg
gatattgctcagcaattgttgttacggagaaagcatagagatggtgctggatcctccttt
tttgatccaaatatgctatcgcagaattccgttagtttcattcccgaatccctccgtcca
aaacctggacacctctctctgtctcagcagcgagtttatgaggactttgttcaacatcct
tggcaaaagcagtcgacccagacttcacacggtttatctgctgcatcaagctcatctagc
gatgttgcacttggtagtggttatggtccagtatcaggaaaagttgcttctgactttttg
tctagtgctggaaatgctaggatggatatggtctcccggccatcagatatttctgtggat
ggttttgaatcttcagtctcgcttttgagcccacaagttgatccagctggtgactcagcc
agtcttcaatttgctaaatcactgccaacctcagaattgaatctggttgaaccctctgat
gctgctatgaaagaaattggaacgtcactgcagacactgacttcagctgctaccatggaa
cgagttggtggaactaatattacacagccttctctgtccacgagagatgcactggataag
tatcagattgttactcagaagatggaggaactagtggctaataatgcaggagatgatgaa
attcaggccgtagtttctgaagttcctgaaattatcctcagatgtataagcagagatgaa
gccgcttttgctgtcgctcaaaaagctttcaaggctctttatgagaatgcatcaagtaac
cttcatgtcagtgctaacctagcaatacttgttgctattcgtgatgtttgcaagcgtgtc
gttaaagagctcactagttgggtgatttattcagaggaggagcggaagcttaacaaagac
attactattggtcttattcaacgcgagttgctcagcctagcggagtacaatgtccacatg
gcgaagcatcttgatggagggagaaacaagagcgcaactgactttgctatttctctactc
caatccttggtcactgaagagtccagtgtcatttcagagctccacagtcttgttgatgcg
ctggcaaagcttgcctcaaaatccggatctcctgagtcgttgcaacagttaattgacatc
atacgaaatccagttactaactcagctggcctctctgatagtgcaaccggaaatgagtac
aatgataggcaaaaggatgaaaaggttgcgtgcaataccacttctaacacagatgtgaat
accagcttggattatgtggaatcagatcctgcgggattccgggatcgggtgtccacgctt
tttgaaagctggtatcaaatctgcgaactaccgggtgcaaatgaaactgcttgttcacaa
tatgtccttcacttgcatcagactggattactcaagggagatgatacgacagagagtttt
ttccgaactcttctggaaatttctgttgctcattgtatatcttcagaagaaataagttct
ggtgctgtgcaatctcctcagcaagctcagagtccatcattcctcgccatcgatatgtat
gcaaagcttgttttttcaatcttgaagtatttccctgagcaggagtacaacagcaagttg
tttcttctttcggagatcatggctgtcactgtgagatgtatacaaaaggacgcagaagat
aaaaagacatcactcaatccaaaaccatattttcgattgttcatcaactggctgctggac
ttatgttccttggatcctgggactgatggtgcaaactttcaggttctcacagcttttgcc
aacacatttcacgcgttgcagcctcttaagattcctgctttcagctttgcatggctagag
cttgtcagccacagaagcttcatgcccaaactacttacagtaaatggccagaagggttgg
ccatatgttcaacgcctgctggtggacttgcttcagtttcttgagccatttttaagaaat
gctgaactcggaggaccagttcatttcctatacaaagggacattgagagtgttactggtg
ctgcttcatgacttcccagaatttctctgtgattatcattttactttctgtgatgtgatt
ccttcaagttgcatacaaatgcggaatattattctcagttcttttccacggaacatgagg
cttccagatccttctaccccaaacttaaagattgatttgttgcctgagattgtagaagct
ccctgtatcctttccgaggttgatgctgcgctaaaaggaaagcaaatgaaaaatgacgtg
gatgagtatcttatgtcgaggcaacagaattcaactttccttagtgagctgaaacagaag
ttacttctctcgtcaagcgaggctacttcagctggaacacgttacagtgtaccattgatc
aactcgcttgtgctatatactggaatgcaggctattcagcagctacaggcgggtgagaca
caggctcaaaatgttgtggccttacagatgtttaagtatttaagtatgaaacttgatacg
gaaggacgttatctgttccttaatgccattgccaaccagcttcgatatcccaacaaccac
acacattacttttccttcatcatgctctatctcttcttcgaatctgaccaggagatcata
caggaacaaataacaagagttctgttggaaaggctcattgtgaaccggccacatccatgg
ggcctcctaatcacattcattgagctcatcaagaatccaagatatggtttctggaaacaa
gccttcattaggtgtgcgcctgagattgagaaactctttgaatctgtagccagatcctgt
ggtggcctcaagcctgttgacgagggaatggtctctggttgggtctccgacaattctcat
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (27)   

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