KEGG   Camelina sativa (false flax): 104785518
Entry
104785518         CDS       T05044                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
  KO
K14327  regulator of nonsense transcripts 2
Organism
csat  Camelina sativa (false flax)
Pathway
csat03013  Nucleocytoplasmic transport
csat03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    104785518
   03015 mRNA surveillance pathway
    104785518
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104785518
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     104785518
   mRNA cycle factors
    P-body specific factors
     104785518
SSDB
Motif
Pfam: MIF4G Upf2 Glycos_transf_N DUF1043
Other DBs
NCBI-GeneID: 104785518
NCBI-ProteinID: XP_010509041
Position
5:4764747..4771969
AA seq 1175 aa
MDHPEDEIHNSEKQDDEEALARLEEIKKSIEAKMTLRHNNLNPERPDTAYLRTLDSSIKR
NTAVIKKLKQINEELREGLMDDLRGVNLSKFVSEAVTAICEAKLRSSDIQAAVQICSLLH
QRYKEFSPSLTQGLLKVFFPGKSTEDLEADKNSKAMKKRSTLKLLLELYYVGVIEDSNIF
INIIKDLTSVEQLKDRDTTQTNLTLLASFARQGRVFLGLPISGQDEDFFKGLGVTADQKK
SFKKAFNTYYDALADLLQSEHKLLHQMEKDNAKLVNAKGELSEDSASSYEKLRKSYDHLY
RNISSLAESLDMQPPLMPEDGTTRLTAGDEASPSGAVKDTSAPEPIWDDEDTKTFYECLP
DLRAFVPAVLLGEAESKSSEQSAKAKDKSSESSSEIVESQQTTEDTITEVPADSGSMPDG
SNTEQPKEKEEVEKEKAKDTKKEKGKEKDSEKKLENEKEKGKSLDVANFERLLQRLPGCV
SRDLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLGYYSRMVATLATCMKDIPSML
VQMLEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDEFTHHNI
DVACNLLETCGRFLYRSPETSLRMTNMLDILMRLKNVKNLDPRQSTLIENAYYLCKPPER
SARISKVRPPLHQYIRKLLFSDLDKESIVNVLKQLRKLPWSECEQYILKCFMKVHKGKYG
QIHLIASLTSGLSRHHDEFAVAVVDEVLEEIRVGLELNEYGAQQKRLAHMRFLGELYNYE
HVDSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRIRMVIILLETCGHYFDRGSSKKRLD
QFLIHFQRYILSKGHLPLDIEFDLQDLFANLRPSMTRYATIEEVNAAILQLEEREHYSSG
DKVSVERHSDTKPPSRSSSVVEGIGVNGEAHGEESDSDSGSGSVVRDGQNEELDDGNHDR
GSESDDGDDYDDGDGPGSDDDNKFRVRQKVVTVDPEELADFDQELKALLQESMEQRKLEL
RGRPALNMTIPMSVFEGSGKDHHFGRLVGENGEELLDEENGEQREVQVKVLVKRGNKQQT
RQMLIPSDCSLVQSTKQKEAAELEEKQDIKRLVLEYNERDEEEANGLGTQILNWTPGGGR
GFTRGTGEGSGSRGGSRHRFYYHQGGGGSYHARRK
NT seq 3528 nt   +upstreamnt  +downstreamnt
atggatcatccagaagatgaaatccacaacagcgagaaacaagacgacgaggaagctctt
gctcggcttgaagagattaagaagtcaattgaagctaaaatgactcttcgtcataataat
ctcaatcctgaacgacctgatacggcatatcttaggactcttgattctagtattaagcgg
aatacagcagttatcaaaaagttaaagcagattaatgaggagttgcgagaaggtttgatg
gatgatctgcgaggtgttaatcttagcaagtttgttagtgaagctgttactgccatctgt
gaggctaagctcagaagctctgatattcaagctgctgttcagatttgctcgctacttcat
cagaggtataaagaattttctcctagtctaacacaagggctcttgaaagtcttctttcct
ggaaaatctaccgaagatttagaagcggataaaaactcaaaggccatgaaaaagcggagt
accctaaaactacttctggagctttactatgttggagtaatagaagatagtaacatcttt
attaatattattaaggatcttaccagtgttgaacaactgaaagacagagatacgacccaa
acaaatctgacacttcttgccagttttgctcgacaaggaagagtttttctggggcttcct
atttctggacaagacgaagattttttcaagggtctcggcgtaactgctgatcagaaaaag
agttttaagaaagctttcaacacatattatgatgctcttgcagatctccttcagtctgaa
cacaagttacttcaccaaatggagaaggacaatgcaaaactggtaaatgctaaaggggag
cttagtgaagacagtgcatcttcgtatgaaaagctgaggaaatcatatgaccatctctat
cgaaatatctcatctttggccgaatcacttgatatgcagcctcctcttatgccagaggat
ggtacaactaggctcacagcaggggacgaagcctcaccctctggtgctgtaaaagataca
tctgccccagaacctatttgggacgacgaagacactaagacattttacgagtgcttgcct
gatctgagggcatttgttcccgcagtattattgggagaagcagaatctaaatcaagcgag
caatctgctaaagcaaaagataaatcatctgagtctagctctgaaattgtcgaaagtcaa
caaacaactgaagacacaataacagaggttcctgctgattctggtagtatgcctgatgga
tcaaatactgagcagccaaaagagaaggaagaagtagagaaggaaaaggctaaagatact
aagaaggaaaaagggaaagaaaaggatagtgagaaaaaattggaaaatgagaaggagaaa
ggtaagagtcttgacgtggcaaacttcgaaagattgttacaacgactacctggttgcgta
agccgtgatcttattgaccaattaacggtggaatattgttatttgaattccaagacaaac
agaaaaaaacttgtcaaagcgttatttaatgtccctaggacatctctggagttgctagga
tactattcgcgtatggttgcaacactagcaacgtgcatgaaggatatcccatctatgctt
gtgcagatgttggaggacgagtttaattctctggtccataaaaaggaccaaatgaatatc
gaaacaaaaatccgaaacatcagatttattggagaactttgcaagtttaaaattgcacct
gctggacttgtattcagttgtttaaaggcttgcttagatgagtttactcatcataacatt
gatgttgcttgcaatcttctggagacatgtggccgtttcctttatcgatctcccgaaacc
tcactcaggatgacaaatatgctggacatattgatgcgcctgaaaaatgtcaagaattta
gatcctcgccaaagcactcttatagaaaatgcctactacctttgtaaacctcctgaaaga
tcagcaagaatttctaaagttcgtccaccattgcatcagtatattcgaaaattgctattc
tcggatcttgataaagaatccattgtgaacgttctgaagcaactgcggaagctgccttgg
agtgaatgtgagcaatacatcttaaagtgctttatgaaagttcacaagggaaagtatggt
cagattcacttaattgcttccttgacttctggtttgagccgccatcatgatgagtttgca
gtggctgttgttgatgaggtcctggaggagataagggttgggcttgagttgaatgaatat
ggggcacaacagaagcgactagcccatatgagatttttaggggagctgtacaattatgag
cacgtagattcatctgtgatattcgagacgctttatttaactcttttatatggtcatgat
acttcagagcaagaggtgctggatccaccagaagattttttccgtatcaggatggttatc
attcttctggaaacctgtgggcactactttgatcgaggttcatcaaagaaaaggcttgat
caatttttgatacacttccagagatacatactcagcaagggtcaccttcccctggatatt
gaatttgacttgcaggatctatttgccaatttgagacccagtatgacccgttatgcaaca
attgaggaagtcaatgcagctatactgcagctggaagagcgtgagcattattcttcagga
gacaaagtcagtgtagaaagacactcagacacaaagcctccaagtaggtcatcgtcagtt
gtagaaggtattggagtgaatggagaagctcacggagaagaaagcgacagtgattctggt
agtggctccgtggtccgagatggacagaacgaagagttggatgatggaaatcatgaccgg
ggatctgagagtgacgatggggatgactatgatgatggagatggacctggatctgatgat
gataataaatttcgtgttaggcaaaaggtggtaactgtagatcctgaggaactagcagac
tttgatcaagaactgaaggctttacttcaggagagcatggagcaaaggaagctagaatta
cgtggtagaccggcattgaacatgacaataccgatgagtgtttttgaagggtctggaaaa
gatcatcattttgggcggttagtaggtgaaaatggagaagaattgttggatgaagagaac
ggagagcaaagagaggttcaagtgaaggtcctggtgaagagagggaacaaacaacaaaca
aggcaaatgctaatcccgagtgattgttcgctagtgcagagcacaaaacagaaagaagct
gcggaattggaagagaaacaagacataaagaggttagtactcgagtacaatgagagggat
gaagaggaagcgaatgggttagggacacagatattgaattggactcctggaggaggcaga
ggattcactcgaggtaccggggaaggcagtgggagtcgcggcgggtctcgtcaccggttt
tattatcatcaaggaggtggtggttcgtatcatgcccggcgaaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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