KEGG   Camelina sativa (false flax): 104786239
Entry
104786239         CDS       T05044                                 
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03040  Spliceosome
csat04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104786239
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104786239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csat03041]
    104786239
   04121 Ubiquitin system [BR:csat04121]
    104786239
   03400 DNA repair and recombination proteins [BR:csat03400]
    104786239
Enzymes [BR:csat01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104786239
Spliceosome [BR:csat03041]
 Complex B
  Other components
   Prp19 complex
    104786239
 Complex C
   Prp19-CDC5 complex
    104786239
Ubiquitin system [BR:csat04121]
 Ubiquitin ligases (E3)
  U-box type E3
   104786239
DNA repair and recombination proteins [BR:csat03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    104786239
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 NBCH_WD40 PROPPIN eIF2A zf-Nse U-box WD40_like Nup160 PAS_11
Other DBs
NCBI-GeneID: 104786239
NCBI-ProteinID: XP_010469490
Position
16:3149162..3156888
AA seq 527 aa
MNCAISGEVPAEPVVSTKSGLLFEKRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIK
PKTLQTASIPGMLGTFQNEWDGLMLSNYALEQQLHTARQELSHALYQHDSACRVIARLKK
ERDEARQLLAEVERHIPAAPEAVTANATLSNGKRAAGDEDLGSDAKKLCPGISAEIITEL
TDCNAALSQKRKKRQIPQTLASIDALEKFTQLSSHPLHKTNKPGICSMDILHSKDVIATG
GVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDADLVLTASADKTVRIWRDSGDGNYA
CGHTLNDHSAEVQAVTVHPTNKYLVSASLDSTWCFYDLSSGLCLSKVSESDNSQKVGYTA
AAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGV
RLWDLRKLRNFKSFLSADANSVEFDPSGSYLGIAASDIRLYQTASVKAEWNLIKTLPDLS
GTGKATCVKFGSDAQYVAVGSMDRNLRIFGLPGNEKANADDDSAQDQ
NT seq 1584 nt   +upstreamnt  +downstreamnt
atgaactgtgcaatttccggagaagttcccgcggagccagtggtttcgacgaagtctggt
ctgctcttcgagaaacgattaatcgaaaggcatatatcggattatgggaagtgcccggtt
actggtgaacctcttaccattgatgacattgttcccatcaaaactggggagatcataaag
ccgaaaacattgcagacagctagcatccctggaatgctcggaacgtttcagaatgaatgg
gacggtttgatgctatcaaattatgcgctggaacaacaactacatactgcaaggcaagag
ctaagtcatgccttgtatcagcatgattctgcctgtcgtgtgattgctagacttaagaaa
gaaagagacgaagcacgccaattgcttgcagaagttgaaagacatattcctgcggcccct
gaagctgtgacagctaatgctactctaagtaatggtaaacgagctgcaggtgatgaagac
ttgggttctgatgcgaagaaattgtgtcctggaatttcagctgaaattatcacggaattg
actgattgtaatgctgctctttctcagaagcgcaaaaagcgacagattcctcaaacattg
gcttcaatagatgctttggagaagttcactcagctatcaagccacccacttcacaagacc
aacaaaccaggcatttgttcgatggacattctacattctaaggatgttattgctactgga
ggagttgatgcaactgctgttctctttgatcgtccttctggacaaatcctgtcaacactg
actggtcactcgaagaaggttacaagcgtaaaatttgttggtgacgctgatcttgttttg
actgcttctgctgacaagacagtccgtatctggcgggattctggggatggaaattatgct
tgtgggcacacgttgaatgatcactccgcagaggttcaagctgtaactgtgcaccccaca
aataaatacttggtgtcggcatctcttgatagtacatggtgcttctacgatctgtcctct
ggcttatgcctttcaaaggtatcagaatcggataattcacagaaggtgggttacacggct
gctgcattccatcccgatggtctcattctcggaactggtacttctcagtctgttgttaag
atttgggatgttaaaagtcaggcaaatgtggctaagtttgatggacacaccggggaagtg
acggctatatctttctcagaaaatggttatttcctcgcgactgctgcggaggatggtgtg
aggttgtgggacctgcgcaagttgaggaacttcaagtcatttttatctgcagatgcaaac
tctgtggagtttgaccctagcggatcttatctcggtattgctgcatcagatatcagattg
taccagacggcaagtgtgaaagcagaatggaaccttatcaagacactcccagatctctcc
ggcactggtaaagctacgtgtgtgaagtttggttcagatgcacaatacgttgcagttggt
tcgatggaccgtaacctacggatatttggtcttcctggtaacgaaaaagccaatgccgat
gacgattctgcgcaagaccagtga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

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