KEGG   Clostridium saccharobutylicum: CLSA_c29470
Entry
CLSA_c29470       CDS       T02876                                 
Name
(GenBank) exodeoxyribonuclease V
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
csb  Clostridium saccharobutylicum
Pathway
csb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:csb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CLSA_c29470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csb03400]
    CLSA_c29470
Enzymes [BR:csb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     CLSA_c29470
DNA repair and recombination proteins [BR:csb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CLSA_c29470
SSDB
Motif
Pfam: AAA_30 AAA_19 UvrD_C_2 Viral_helicase1 AAA_11 HHH_4 AAA_22 SH3_13 RsgA_GTPase UvrD-helicase PIF1 T2SSE SLFN-g3_helicase DUF1611_N AAA_16 DAO_C AAA AAA_12
Other DBs
NCBI-ProteinID: AGX43914
UniProt: U5MT40
Position
complement(3287409..3289196)
AA seq 595 aa
MKKVNKDNELGIKENLIKEFNISKEVAEKLIADYGADIANIITDKPYILSHYLMPLEEVK
QIIEKCSTNKNEDYKNRNIVAALIIYVIESMAEFEGHVFCYKSELEDRVKGLEVFSNEEK
SLNEALELLRIENEIVIDNDSNGEVCIYLSRLYKAEVELANVMSYLVKMNQCTNWKINNQ
NKIGELINSYNNSDIKLNKDQIDAINTALNNGISIVSGLAGTGKTTVIKTIVEGFKAILP
IHQPEIHIVAYTGKSVDELSKKTGIQGTTIHRFLGIGVDVNYKIESKKVDVIVVDESGLI
GIELMNQLICSAVKENPNVRVVIVGDPFQLQSIEPGCILKELLKSEVIPVVELRDVVRQK
KESLITNNAHKIIKGTGLDESKSGVRLKRSEFEFIETESSDIKEKVLGAIDKLLNEGTSI
YNIQVMSPMKKGINGVEELNREIADRFNYVTERDIYKFEVVDPIIVIRSMSSKGIFNGQQ
GWVKKVEKSTNGVELITADLFGIEVSFNKNEIEEIELSYASTIHKMQGSECEVAIIVVDK
AHERMLSRELLYVGVTRGVKQVILVGDKEAFNEGVRSVSKERNSLLAERLVRISS
NT seq 1788 nt   +upstreamnt  +downstreamnt
atgaagaaagttaataaagataatgaattaggaattaaagagaaccttataaaagaattc
aacattagcaaagaagtagctgaaaaattgattgcggattatggtgcagatatagcaaat
attattacagataaaccttatatattaagtcattatttaatgcctttagaagaagtaaaa
cagataattgaaaaatgtagtaccaataaaaatgaagattacaaaaataggaatatagtt
gcggccctaataatttatgtgattgagtctatggctgaatttgaagggcatgtgttttgc
tataagagtgaattagaggatagggttaaaggtttggaagtattcagtaatgaggagaaa
tcattaaatgaagcattagaattgttaaggattgaaaatgagatagttattgataatgat
tctaatggagaagtatgtatatatttaagtagattatataaagcagaggtagaactggca
aatgtaatgagctacttagttaaaatgaaccaatgtactaattggaaaataaacaatcaa
aataaaataggagaattaattaacagttataacaattcggatattaaattaaataaggat
caaatagacgctattaatacagcgttaaacaacggtattagtattgtttcaggactggca
ggaacagggaaaactacagttataaaaactattgtagagggctttaaagctatattgcca
atccaccaacctgaaatacatattgttgcatatactggaaaatctgtagatgaactaagt
aagaaaacaggtatacagggtacaactatacatagatttttaggcataggagtagatgtt
aactataaaatcgagagtaaaaaagtagatgtaattgttgttgatgaaagtggtttaatt
ggaattgaattaatgaaccagttaatttgtagtgctgttaaggaaaatccaaatgtaaga
gttgttatagtaggagacccttttcagttacaatcaattgagccaggttgtatattaaaa
gaattattaaaaagtgaagtaattccagtggtagagctaagagatgttgtacgtcaaaaa
aaagagagtttgataactaataatgctcataaaataattaaaggcactgggcttgacgaa
agtaagtcaggcgtaaggctaaaaagaagtgagtttgaatttattgaaactgaaagttca
gatattaaagaaaaagtattaggagcaatagataaattgcttaatgagggtacaagcatt
tataacatccaagttatgtctccaatgaaaaaaggaattaatggagtggaagaattaaat
agggaaatagctgatagatttaattatgttactgaaagagatatttataaatttgaagtt
gtagacccaataatagtaataaggagtatgtcttctaaaggtatctttaatggacaacaa
ggatgggttaagaaggttgaaaaaagcactaatggggtcgagcttattacagcagattta
tttggaatagaagtgagttttaataaaaatgaaattgaagaaatagaactttcatacgct
tcaactatacataaaatgcaaggcagtgaatgtgaagtggcgataatagttgtagataag
gcacatgaaaggatgttaagcagagaattattgtatgttggagtaacacgtggagttaag
caggtaatattggtaggagacaaggaagcttttaatgaaggtgtgagaagcgtaagcaag
gaaaggaattcactgttagcagagagattagtaaggataagtagttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (28)   

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