KEGG   Clostridium stercorarium subsp. stercorarium DSM 8532: Clst_1549Help
Entry
Clst_1549         CDS       T02527                                 

Gene name
ligD1
Definition
LigD (EC:6.5.1.1)
Orthology
K01971  
DNA ligase (ATP) [EC:6.5.1.1]
Organism
csd  Clostridium stercorarium subsp. stercorarium DSM 8532
Pathway
Base excision repair
Nucleotide excision repair
Mismatch repair
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csd00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Clst_1549 (ligD1)
   03420 Nucleotide excision repair
    Clst_1549 (ligD1)
   03430 Mismatch repair
    Clst_1549 (ligD1)
   03450 Non-homologous end-joining
    Clst_1549 (ligD1)
Enzymes [BR:csd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Clst_1549 (ligD1)
DNA repair and recombination proteins [BR:csd03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Clst_1549 (ligD1)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(1731887..1732759)
Genome map
AA seq 290 aa AA seqDB search
MNKSRLQISNPDKLLFPDVGITKLEYIEKLYELSGYILKYTKGRALTTIHYPDGVSEKSY
YQKNIPSHAPDFVSHKLIGDIDYIIMDSAETLLWLGNMAALEFHIPFNSITRPDHPDALV
FDLDPSEGQSFAQVTDAAMIIYNTLEELGIRSYCKTSGATGLQIAVPLAGEIDYDTARKV
NEFFGRYFAQKYPDVFTIERKINDRGKKIYFDYLQMWKGKTIICPYSPRATKTANVSAPV
LWEEVEKGIVPEDFTLKNIIQRLEEKGDLYESVYTSGLDAGIKNLMAEIM
NT seq 873 nt NT seq  +upstreamnt  +downstreamnt
ttgaacaagagcaggttacaaatatccaatccggataaactgctgtttcccgatgtgggg
ataaccaaattggaatatattgaaaaactttatgagttatcgggctatattttaaaatat
acaaaaggcagagcgttgactacaatacattatcctgacggtgtgagcgaaaaatcatat
taccagaaaaacattccttcccatgcgcccgattttgtctcccataaattaataggagat
attgattacattataatggattcggcggaaaccctcctttggcttggaaacatggctgct
ttggaatttcacataccgtttaattcaataaccaggccggaccatcccgatgcccttgtt
tttgatttggatccgtcggaaggtcagtcttttgcccaggtaaccgacgctgcaatgata
atttacaataccctggaagagctgggaattagaagctactgcaagacttcaggggcgact
gggctgcaaatagcggtaccgttggccggtgagattgattacgataccgcaagaaaggta
aatgagtttttcggacggtattttgcacagaaatatcctgatgtttttacaatagagcgt
aaaataaacgacagaggcaaaaaaatatattttgactacctgcagatgtggaagggtaaa
acgattatctgcccgtattcgccgagagctacgaaaactgcgaatgtctcggctcctgtt
ttatgggaagaggtggaaaaaggaattgtacctgaggattttacgttaaaaaacataata
caaaggcttgaggaaaaaggtgatttgtatgaaagtgtatatacctcagggcttgatgca
ggaattaaaaatttaatggcagaaataatgtga

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