KEGG   Cynoglossus semilaevis (tongue sole): 103385916
Entry
103385916         CDS       T04866                                 
Symbol
usp4
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 4 isoform X1
  KO
K11835  ubiquitin carboxyl-terminal hydrolase 4/11 [EC:3.4.19.12]
Organism
csem  Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:csem00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:csem01002]
    103385916 (usp4)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:csem04121]
    103385916 (usp4)
Enzymes [BR:csem01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     103385916 (usp4)
Peptidases and inhibitors [BR:csem01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   103385916 (usp4)
Ubiquitin system [BR:csem04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    103385916 (usp4)
SSDB
Motif
Pfam: UCH Ubiquitin_3 DUSP UCH_1 USP7_C2 USP7_ICP0_bdg
Other DBs
NCBI-GeneID: 103385916
NCBI-ProteinID: XP_008318166
Position
11:3533392..3544000
AA seq 1020 aa
MMAEGGGPESGGAADSEPVAAQMPTPSTESQKQTIGTLLKTTLRKGDEWFLIDSRWFKQW
KKYVGFDSWDMYIVGERSLFPGPIDNSGLFSGTCSYLFWRILDCKDQDTQVLKEHLIDEL
DYVLVPTEAWNKLVSWYGCLEGQRPIARKVVEHGMFVKHCKVEVYLLELNLCENENMDNV
VTRHFSKADTIDIIETEMRTLFHIPSEKETRLWNKYMSNTYEQLNKPDSTVQDAGLFQGQ
VLVIEQKNEDGTWPRQASHPKSSTTPSRNFTTSPKLSSYSSASISSTVANGDSGCTPGYT
LNNSTSSGNRLGSYNSYNSSYNYRESQSQPGLCGLSNLGNTCFMNSALQCLSNASPLTEY
FLNDQYEAEINRDNPLGMRGEIAEAYADLVKQMWLSRSSYVAPRTFKTQVGRFAPQFSGY
QQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDAEGRPDEIVAKEAWTNHRLRNDSIIVD
IFHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPMKKDRSMEVFLVRTDPQSRPTQYRVVV
PKLGNVTDLCSALSKLCGIPSENMVVTDVYNHRFHKIYRRDENLNQIMEKDDIFVYEVQE
EDSERMNLPVYFRERQSKHSGSSTTTMLFGQPLLITVSRHNLIADVLYDKILERIGRYVK
QPQNPSSESRASASFTASSSSSQTPECSAASSLSAGLGSPLSDGASCSVSSSNGSNHSVT
CNDTNGLYDGEEEAMDHQVSPEPQNGQSEEEEESSDLENGPKEEAVNSSSSPSKLFAFSV
VNSYGTANITPLPCEGNVLKLNPHSTVAIDWDVESKKMFYDEQEAEAYEKHESMIQPQKK
KATVALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNR
CWRDKLDTVVDFPIRDLNMSEFVCDPKASPYVYDLIAVSNHYGGMGGGHYTAYGKNKMDG
KWYYFDDSSVSSASEDQIVTKAAYVLFYQRREEEAPPCKPQPSASLGGAPDAADDHMDTN
NT seq 3063 nt   +upstreamnt  +downstreamnt
atgatggccgagggaggcggacccgagtcgggtggcgcggcggactcggagccggtagcc
gcacagatgccaacaccttcaaccgaaagtcaaaagcagactatagggaccctcttgaaa
acaacactaaggaaaggcgacgaatggtttctaatagacagccggtggttcaagcaatgg
aagaagtatgtgggatttgacagctgggacatgtacattgttggagaacgaagtctcttt
cctggaccaattgataattctgggcttttttctggtacatgctcatatcttttttggaga
atattggattgcaaagaccaggacacccaggtcctgaaggagcaccttatagatgagctg
gactatgtccttgttcctactgaggcctggaataaacttgtcagctggtatggctgcctg
gagggtcagagaccaattgccaggaaggtggtggaacatggcatgttcgttaagcactgt
aaagtggaggtctacctcctggagttaaatctgtgtgagaatgaaaacatggacaacgta
gtcactcggcattttagtaaagctgacacgatagacattatagagacggagatgagaacg
ctgttccacatcccatcagagaaggagacgcggctgtggaacaaatacatgagcaacacc
tacgagcagctgaacaaacctgacagcactgtacaggacgctggtctcttccaggggcag
gtgcttgtaattgagcaaaaaaatgaggacggcacatggccgagacaagcttcccatccc
aaatcgagtacgaccccgtccaggaacttcactacctcccccaaactgtcttcttactct
tcagctagtatctcctcaacagtagccaacggtgacagcggctgtaccccgggatatacg
ctcaacaacagcacgtcatctggaaacagactggggagctacaactcctacaactcatcc
tacaactacagggagtcacagtctcagcctggtctgtgtggcctcagcaatttgggcaac
acctgctttatgaactctgccctgcagtgcctgagcaatgcatctccactcacagagtac
ttccttaatgaccagtatgaagcagagattaaccgggataatccactgggaatgaggggg
gaaatagccgaagcctatgccgatctggtgaagcaaatgtggctgagccgcagcagctac
gtggccccacgtaccttcaaaacccaggtgggacgcttcgccccccagttttcgggctac
cagcagcaggactcacaggaattgttggcctttctgttggatgggctgcatgaagatctg
aatcgtgttaagaagaagccttatctggccctgagagacgccgagggccgtccagatgag
attgttgccaaggaagcctggaccaaccaccgtttgaggaatgactccatcatagtggat
atttttcatggccttttcaagtcaacgttggtgtgcccagagtgctccaaggtgtccgtc
acctttgacccattctgctacctcactttacccctgccaatgaaaaaagaccgctcaatg
gaggttttcctggtacggacggaccctcagtccagacccacacagtaccgagtggtggtc
cccaaactgggtaacgtaacagacctgtgcagcgccctgtccaaactctgtggaatccca
tcagaaaacatggtggtgacggacgtttacaatcacaggttccataaaatctatcgacgg
gatgagaacctcaaccaaatcatggagaaggacgatatatttgtctatgaggtgcaggag
gaggacagcgagaggatgaacctccccgtgtacttcagggagcgacagtccaaacacagc
gggagctccaccaccaccatgctgtttggtcagcctctgctcatcaccgtgtcccgacac
aacctcatagctgacgttctgtacgacaagatcctggagagaatcgggcgttacgtcaaa
cagccccagaaccccagcagtgaaagcagagcctcggcctctttcaccgccagcagcagc
agcagtcagactcctgaatgttcagcagcgtcgagtctctccgccggtctgggcagtccg
ctgtcggacggagcgtcctgcagtgtcagctccagcaacggcagcaaccactcggtgacc
tgcaacgacaccaacgggctgtatgatggtgaggaggaggccatggaccaccaggtgagc
ccagagccacaaaatggccaatcagaagaggaggaggagtcgtccgatctggagaacggg
cctaaagaagaggcggtgaattcaagctcttcgccgtcgaagctcttcgctttcagcgta
gtcaactcgtacggaacagcaaacatcaccccactgccttgcgaaggaaatgttctcaaa
ctaaatccacattccacggtggccatcgactgggacgtagagtccaagaaaatgttctac
gatgaacaggaagctgaggcctacgagaagcacgagagcatgattcagccgcagaagaag
aaagccaccgtggccctgagggagtgcatcgagctcttcaccaccatggagacactgggt
gaacacgacccgtggtattgtcccacatgtaaaaaacaccaacaggccacgaaaaagttt
gacctttggtccctgcctcgtattctggtagttcacctaaaacgcttctcatacaaccgc
tgttggagggacaagctggacacagtggtggacttccccatcagagatttaaacatgtcg
gagttcgtgtgcgaccctaaggccagcccttacgtctacgacctcatcgccgtgtcgaac
cactatggaggaatgggtggaggtcactacacggcctacggcaaaaataagatggacgga
aagtggtattactttgacgacagcagcgtctcgtcggcctcagaggaccagattgttact
aaagcggcctacgtattgttttatcagcgtagagaggaggaagcccccccctgcaaacct
cagccttcagcctccctgggaggagcccccgacgcggccgacgaccacatggacacaaac
tga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (58)   

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