KEGG   Cynoglossus semilaevis (tongue sole): 103394678
Entry
103394678         CDS       T04866                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem03018  RNA degradation
csem03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csem00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103394678 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103394678 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csem03019]
    103394678 (lsm4)
   03041 Spliceosome [BR:csem03041]
    103394678 (lsm4)
Messenger RNA biogenesis [BR:csem03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103394678 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103394678 (lsm4)
Spliceosome [BR:csem03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103394678 (lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 103394678
NCBI-ProteinID: XP_008330318
UniProt: A0A3P8WCQ4
Position
2:complement(4547245..4549998)
AA seq 142 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVLSKGRGRGGAQQNKQQGKGRGGIGRGVFGGRGRGMGG
AGRGQQQQDKKPGKPQGMKNQH
NT seq 429 nt   +upstreamnt  +downstreamnt
atgcttcccttatctctgttaaagactgcccaaaatcatcctatgctggtggaactgaag
aatggagagacgtataacggtcacttagtcagctgtgacaactggatgaacataaacctg
agagaagtcatctgcacctccagggatggagataaattctggaggatgcccgagtgttac
atcagaggcagcaccatcaagtatttgcgaatcccggatgagatcattgatatggtaaag
gaggaggtgttgtcaaagggacgtggtcgtggtggcgctcagcaaaacaaacagcagggc
aaaggaaggggaggcattggcagaggtgtgtttggtggtcgtgggcgaggcatgggtgga
gctggccggggccagcaacagcaggataagaaaccaggcaaaccccaggggatgaagaac
cagcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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