KEGG   Cronobacter sakazakii ATCC 29544: CSK29544_00660
Entry
CSK29544_00660    CDS       T03903                                 
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
csj  Cronobacter sakazakii ATCC 29544
Pathway
csj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CSK29544_00660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csj03021]
    CSK29544_00660
   03400 DNA repair and recombination proteins [BR:csj03400]
    CSK29544_00660
Enzymes [BR:csj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CSK29544_00660
Transcription machinery [BR:csj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CSK29544_00660
DNA repair and recombination proteins [BR:csj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CSK29544_00660
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: AKE93624
Position
complement(683067..687095)
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDYTTEQILDLFFEKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDEIKHIEVPVEYIAGKVAAKD
YVDASTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTTDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANTNLTEEGRFADDLVTCRSKGESSLFSADQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGIVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLNEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLIAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKRQEEVAK
LREFIQKAYDLGQDVRQKVDLNTFSDDEVLRLAENLRKGMPLATPVFDGAKEAEIKELLQ
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgttccctatctcctttctatccagcttgactcgttccagaaatttatcgag
caagatcctgagggtcagtacggcctggaagcagctttccgctccgtattcccgatccag
agctacagcggcaattcggaactgcaatacgtcagctaccgtcttggcgaaccggttttt
gatgttaaagaatgccaaatccgtggcgtgacctattcggcaccgctgcgcgttaagctg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagagcaa
gaagtttacatgggcgaaatcccgctcatgaccgataacggtacctttgtcattaacggt
actgagcgtgttatcgtttctcagctgcaccgtagcccgggcgtgttctttgacagcgac
aagggcaaaacccactcctctggtaaggtgctgtataacgcacgcatcattccttaccgt
ggctcctggctggacttcgaattcgatccgaaagacaacctgtttgtccgtatcgaccgt
cgtcgtaagctgccggcaactatcatcctgcgcgcgctggattacaccactgagcagatc
cttgacctgttcttcgagaaagtggttttcgaaatccgcgacaacaagctgcagatggag
ttgattccggagcgtctgcgtggtgaaaccgcgtcctttgatatcgaagcaaacggcaaa
atctacgtagaaaaaggccgtcgtatcactgcgcgtcatatccgccagcttgaaaaagac
gaaatcaaacacatcgaagttccggttgaatacatcgccggtaaagtcgctgcgaaagat
tatgtggatgcttccactggcgagctgatttgcccggccaacatggaactgtccctggat
ctgctggcgaaactgagccagtctggtcacaaacgtatcgagacgctgttcaccaacgac
ctcgaccacggcccgtatatttctgagactgtccgcgtcgacccgaccaccgatcgcctg
agcgcgctggttgagatctaccgcatgatgcgtcctggcgagccgccgacgcgtgaagcg
gcagaaagcctgtttgagaacctgttcttctctgaagaccgttacgatctgtctgcggtt
ggccgcatgaagttcaaccgttctctgctgcgcgacgagatcgaaggttccggtatcctg
agcaaagctgacatcatcgacgtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgtatccgttccgttggcgaaatggcg
gaaaaccagttccgcgttggcctggtgcgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgccgcaggatatgatcaacgccaagcctatctccgcg
gcggtgaaagagttcttcggttcaagccagctttctcagtttatggaccagaacaacccg
ctgtctgagatcacgcacaagcgtcgtatctctgctcttggcccgggcggtctgacgcgt
gagcgcgcaggcttcgaagttcgagacgttcacccgacccactacggtcgcgtatgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgagtatggcttccttgagacgccgtaccgtaaagtgaccgacggtgtggtgact
gatgaaattcattacctctccgctatcgaagaaggtaactacgttatcgcgcaggcgaac
accaacctgaccgaagaaggccgcttcgccgatgatttggtcacctgccgcagcaaaggc
gaatccagcctcttcagcgcagaccaggttgactatatggacgtttccacccagcaggtg
gtttctgtcggtgcgtccctgatcccgttccttgagcacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgaccctgcgcgctgataagccgctggta
ggtaccggtatggaacgtgctgttgccgttgactccggtgtaaccgccgtggccaaacgt
ggcggtatcgttcagtacgtggatgcgtcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatctataacctgactaaatacacccgttctaac
cagaacacctgcatcaaccagatgccatgcgtgtctctgaatgaaccggttgagcgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggctacaacttcgaagactccatcctcgtttccgag
cgtgttgtccaggaagaccgtttcaccacgattcacatccaggaactggcgtgcgtatct
cgtgatactaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagcc
gcgctctctaaactggatgaatccggtatcgtctacatcggcgcggaagtgaccggcggc
gacattctggtgggcaaggtaacgccgaaaggtgaaacccagctgaccccggaagagaaa
ctgctgcgtgctatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgtg
ccgaacggcgtttccggtacggttatcgacgttcaggtctttactcgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctcaagcaggccaaaaaagacctg
tctgaagaactgcagatcctcgaagccggtctgttcagccgtattcgcgctgtactgatc
gcaggcggcgttgaagctgagaagctcgacaaacttccgcgcgaccgctggctggaactc
ggcctgaccgacgaagagaaacagaatcagctggaacagctggctgagcagtacgacgaa
ctgaagcacgagtttgagaagaaactcgaagcgaaacgccgcaaaatcacccaaggtgac
gatctggcgccgggcgtgctgaagatcgttaaggtgtatctggccgttaaacgtcagatc
cagccgggcgataagatggcaggccgccacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatcctggaaactcacctgggtatggcg
gcgaaaggcatcggcgataagatcaacgccatgctgaagcgtcaggaagaagtcgcgaaa
ctgcgtgaattcatccagaaagcctacgacctcggccaggatgttcgtcagaaagttgac
ctgaacaccttcagcgatgacgaagtactgcgtctggctgaaaacctgcgtaaaggtatg
ccgcttgccacgccggtattcgacggcgcgaaagaagctgaaattaaagagctgctgcag
ctgggcgacctgccgacttccggtcagatcaccctgttcgatggccgtactggtgaacag
ttcgaacgtccggtaaccgtaggttacatgtacatgctgaagctgaaccacctggttgac
gacaagatgcacgctcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggccagcgcttcggtgagatggaagtgtgggcgttggaagct
tatggcgccgcctacaccctgcaggaaatgcttaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataagaacatcgtggatggcaaccatcagatggaaccgggcatgccg
gaatcgttcaacgtattgttgaaagagattcgctcgctgggcatcaacatcgaactggaa
gacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system