KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_42298
Entry
COCSUDRAFT_42298  CDS       T02914                                 
Name
(RefSeq) ATP-dependent DNA helicase ii
  KO
K10884  ATP-dependent DNA helicase 2 subunit 1
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    COCSUDRAFT_42298
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csl03041]
    COCSUDRAFT_42298
   03400 DNA repair and recombination proteins [BR:csl03400]
    COCSUDRAFT_42298
Spliceosome [BR:csl03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    COCSUDRAFT_42298
DNA repair and recombination proteins [BR:csl03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA-PK complex
     COCSUDRAFT_42298
SSDB
Motif
Pfam: Ku Ku_N SAP Ku_C SAP_new25 Ish1 SDE2_2C
Other DBs
NCBI-GeneID: 17040628
NCBI-ProteinID: XP_005647185
JGI: 42298
UniProt: I0YW72
AA seq 612 aa
MADYDYNADDVDAEEEGFEREFIPTRDNVIFLIDVQHSMFEGAGLKDTEGFEESDTWFDV
ALRVAREFLKMHIISSDSDKIAIAFYGTRVTQNANNFENVYTLQDLDEPTAQRIRDLDSI
REQEFEERVGSAPEKSPDHLKNGLWAAQQLLNSGSSKAYKRLIVARATTLHEANVTVEVF
PLIKPERSFAMGFWNHIVHAGEDAETGTSFSEGADTLYRLQSLPGLLRHRGYRKRTAGRA
RLVFPEGFQLAVAMYALIQPATKSSPVYLHAVKNEPLRIESALICQDTGAILTEVPKRMF
PKKADAEKLAGRIPPVVISTQELRELKIVKDPGLYLLGFKARSCLRSWHTWRQSTFVYPD
EHSMPGSTTAFIALHEAMLQADRIAVCTYVRTRNSEPRLVALMAAQEEKDDYGEQVAPPG
MHMLHLCFADDIRTPESDPNLVGTSFPEASEDQIAAAEAMIDKLSMGDSAYVGMFQNPML
QRHYQVLEALALGELPPEFEDKLQPDIQGMQGVGGAAIDAFRTSVYGNSYDEPGFGAKRP
TAGKKRPNPEEEAVLKEAMADFDYQGLAAKGTLGKLKVDELKKYLKANGLKLTGKKDELI
QRITEHIEKGKA
NT seq 1839 nt   +upstreamnt  +downstreamnt
atggctgactacgactacaatgcagatgacgttgatgccgaggaggaaggattcgaaagg
gagttcattccaaccagggacaacgtcatcttcctcatcgacgtgcagcattccatgttt
gagggcgcgggccttaaagacacagagggttttgaggaatcagatacatggttcgatgtg
gccttgagggtggctcgggaatttctgaagatgcacatcatatcttcagacagcgacaag
attgccattgccttctatggcacgagggtgacgcagaacgccaacaattttgagaacgtc
tacacgctgcaagacttggatgagccgaccgctcagcgcatccgagaccttgacagcatc
agagagcaagaatttgaggagagagtgggcagcgcaccagagaagagccccgatcacctg
aagaatggcctgtgggcagcgcagcagctgctgaacagcggctcgtccaaggcttacaag
cggttgatcgtggcgcgtgccacgacgctgcacgaggccaacgtgacggtggaggtgttt
ccgctgatcaagccggagcgcagctttgcaatgggcttctggaaccacatcgtgcacgcc
ggagaggatgctgagaccggcaccagcttcagcgagggcgctgacaccctctaccgcctc
cagagcctgccgggcctgctgaggcaccggggctatcgtaagcgcacagcgggcagagcg
cggctggtgttccccgagggcttccagctggcagtggccatgtacgcgctgattcagccc
gccaccaagagcagccccgtctatctgcacgccgtcaagaacgagccgctgcgcatcgag
tctgccctcatctgccaggacaccggtgccattctgacggaggtgcccaagcgcatgttc
cccaagaaggcagacgccgagaagcttgccggccgcattcccccagtcgtcatcagcacc
caggaactccgagagctcaaaattgtcaaagacccagggctgtacctgctggggttcaag
gcgcgcagctgcctgcgctcgtggcacacgtggcggcagagcaccttcgtctacccggac
gagcactccatgcccggctccaccacagccttcatcgccctgcacgaggccatgctgcag
gccgacaggatagcggtgtgcacctacgtgcgcacgcgcaactcggagccgcggctggtg
gcgctgatggcagcgcaggaggagaaggatgactacggcgagcaggtggcgccacctggc
atgcacatgttgcacctgtgctttgcggacgacatccgcacgccagagtcagacccaaac
ctggtaggcacctccttccccgaggccagtgaagatcagatcgcagccgcagaggcgatg
attgacaagctcagcatgggcgacagcgcctatgtaggcatgttccagaaccccatgctg
cagcggcattaccaggtgctggaggcccttgccctgggcgagctgcctccagagtttgag
gacaagttgcagccagacatccaggggatgcaaggggtgggcggggcagcaatcgacgcc
ttcagaacatcggtgtatggaaatagctacgatgagccgggctttggggccaagaggccg
actgctggcaagaagcgcccaaatcctgaggaagaggccgtgctcaaagaggccatggca
gactttgattaccagggtctggcggcaaaggggacgcttggcaagctgaaagtggacgaa
ctgaagaagtacctcaaggcaaatggcctgaagctgaccggcaagaaagatgaactcata
caaaggattacagaacacatcgagaagggcaaggcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (45)   

Download RDF
DBGET integrated database retrieval system