KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_62769
Entry
COCSUDRAFT_62769  CDS       T02914                                 
Name
(RefSeq) exoribonuclease PH component of the exosome
  KO
K03678  exosome complex component RRP45
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCSUDRAFT_62769
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csl03019]
    COCSUDRAFT_62769
Messenger RNA biogenesis [BR:csl03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     COCSUDRAFT_62769
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 17042263
NCBI-ProteinID: XP_005648809
JGI: 62769
UniProt: I0Z0U6
AA seq 293 aa
MPPVQFSLDDSGATLDMGQTKVMTVITPTLTAPYEDRPNEGAVRFNVEYSPMASPSFQAG
RPGEAAIEVTRLLERAFRDSRAIDQEALCVLAGHRVWSLSIDVHVLDNGGNLADACMLCT
LAALMAFRRPDTEVAAGGAESGRARVTVLSPSAREPVPLSLHHLPLGISFAFFEDGELLV
VDPDSTEEAAAAGLMTVVVNTHSDVCTVRKTSGIGISMTQVHRVVRLANSRAGQVMDGLK
AALQRHDTSRVAARVRRHTRAAQEPGAPGRSVTVLASGAITGDSLCIDWGRGK
NT seq 882 nt   +upstreamnt  +downstreamnt
atgccccctgtgcagttctccctggatgatagcggcgccacacttgacatggggcagaca
aaagtcatgactgtcatcacacccacactcacagcgccttacgaagacaggccaaatgag
ggtgctgtgcgcttcaatgtggagtactcccctatggcttcgccatcgttccaggcaggg
aggcctggtgaggcagctatagaggtcacgcggcttctcgagcgagccttcagggacagc
agggccatcgaccaggaggcgctgtgcgtgctggcaggccacagggtctggtcgttgagc
atagacgtgcatgtgctggataacgggggaaacctggcggacgcgtgcatgctgtgcacg
ctcgctgcactcatggccttccggcggccggacacagaggtggcggccggaggtgccgag
tcggggcgcgcgcgtgtcacagtgctgtcccccagcgcgcgggagccggtgcccctcagt
ctgcaccatctgcctctcggcatttccttcgcgttctttgaggatggggagctcctggtg
gtggacccggacagcacagaggaggctgcagcggcagggctgatgaccgtggttgtcaac
actcacagtgacgtctgcacagtcaggaagacatccggcattggcatctccatgacacag
gtgcacagagtggtgcgtctggcaaacagcagggcagggcaggtgatggatgggctcaag
gcggcgctgcagaggcatgacacatcgcgcgtggccgcccgtgtccgacgacacacccgg
gctgctcaggagcccggcgcccccggccgctctgtcaccgtcctcgccagcggtgccatc
actggtgactccttgtgcatcgattggggaaggggcaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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