KEGG   Clostridium saccharoperbutylacetonicum: Cspa_c01810
Entry
Cspa_c01810       CDS       T02467                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
csr  Clostridium saccharoperbutylacetonicum
Pathway
csr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Cspa_c01810 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csr03021]
    Cspa_c01810 (rpoB)
   03400 DNA repair and recombination proteins [BR:csr03400]
    Cspa_c01810 (rpoB)
Enzymes [BR:csr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Cspa_c01810 (rpoB)
Transcription machinery [BR:csr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Cspa_c01810 (rpoB)
DNA repair and recombination proteins [BR:csr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Cspa_c01810 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Syndetin_C
Other DBs
NCBI-ProteinID: AGF53999
UniProt: M1M7Q9
Position
181197..184910
AA seq 1237 aa
MVHPVKVGKRTRMSFGKVNDVTEMPNLIEVQLDSYEWFLREGLHEVFDDINPITNFTGNL
VLEFVDYKLDMENIKYSVEECKERDSTYAAPLKVSIRLQNNETGEIKEQEVFMGDFPLMT
EQGTFLINGAERVIVSQLVRSPGVYYNYSIDKSGKKLFSSTVIPNRGAWLEYETDSNDII
YVRIDKTRKLSITILARAMGLGSDQELLDFFGEEERFRASIEKDNTKTKEEALLEIYKRL
RPGEPPTVDSAISLIDTLFFDAKRYDLSRVGRYKFNKKLALNLRIANQVAATDIVNPQTG
EIMVENGQKISRLMAEQIQNAGIKSVDVLIEDKVIRVISNNFVDLKKQVSFDVSDLGIKE
MVHYPTLKEILDNFSDEKSIKEEIKKNINKLIPKHIIRDDIFATISYELGLAYGVGYVDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEAITPQMLINIRPVAAAIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATFAKVNEYGFIETPYRIVDKENSRATDEIRYFTADEEDQCLIAQAKTP
MAENGQFIEKRVTVRHLDDVLVVPATEVDLIDVSARQMVSVATAMIPFLENDDATRALMG
SNMQRQAVPLLNPQAPIVGTGIEFKAAVDSGVLPKAKNAGVVTYVSGSEIRIKRDSDGGT
DIYKLLKFKRSNSGTCINQRPIVDLGELVYKNQVIADGPSTDLGEIALGKNIRMGFITWE
GYNYEDAMLISEELVREDVFTSMHIEEYECEARDTKLGPEEITRDIPNVSEDALKDVDDR
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDIKVFTRENGDELNPGVNELVRCYIAQKRKISVGDKMAGRHGNKGVISRILPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASHLGWHIATPVFDGATQEEITECLVKA
GFNANAKTVLYDGRTGEPFDNLVTVGIMYILKLHHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPES
FKVLIKELQALCLDIKVLNDANEEVTLKEFVDEDMANLEVNIEGTEEVIMQEPEGTIADD
SYDQNPDEDIDDIDYDESVDIEELETELELDDFNDEH
NT seq 3714 nt   +upstreamnt  +downstreamnt
atggtacatcctgtcaaagttggaaaaagaacaagaatgagttttggtaaagttaatgac
gttactgaaatgccgaatttaattgaggtacaattagattcatatgaatggtttttaaga
gaagggctgcatgaagtatttgatgatattaatcctatcacaaacttcacagggaattta
gtgcttgagtttgtagattacaagcttgatatggaaaatatcaagtattctgttgaagaa
tgcaaagaaagagattcaacatatgcagcaccattaaaagtttcgattagattacaaaat
aatgaaacaggtgaaattaaagaacaagaagtgtttatgggtgacttcccattaatgaca
gaacaaggtacctttttaattaatggtgctgaaagagttattgtaagtcagttagtaagg
tcgccgggagtatattacaattactcaatagataagagcggtaagaaattattttcatca
actgtaatccctaatagaggagcatggttagaatatgaaacagattctaacgatatcatt
tatgtaagaattgataaaactagaaaattatcgataactattttagcaagagcaatggga
ttaggaagtgaccaagagttattagacttttttggagaagaagaaagatttagagcttca
atagaaaaggataatactaaaacaaaagaagaagctttacttgaaatatataagagatta
agaccaggtgagccaccaactgttgatagtgcaatatcattaattgatacattgttcttt
gatgcaaagagatacgatctatctagagttggtagatacaaattcaataaaaaacttgcg
ttgaatttaagaattgctaatcaagttgcagctactgacattgttaatccacaaactggt
gagattatggttgaaaatggccagaagataagcagattaatggctgaacaaattcaaaac
gctggtataaaatctgttgatgtattaatagaggataaagttattagagtaatcagcaat
aattttgttgatttgaagaaacaagtttcatttgatgtttctgatttaggaataaaagaa
atggtacactatccaacattaaaggaaatattagataatttctcagatgagaaaagcatt
aaagaagaaataaagaaaaatattaataagcttattccaaaacatattataagagacgat
atatttgcaactattagttatgaattaggattagcttatggagtaggttatgttgatgat
atagatcatctaggaaatagaagattaagatctgtaggtgaattattgcaaaatcaattc
agaattggtttatctagaatggagagagtagttaaagaaagaatgactattcaagatcaa
gaagcaataactcctcaaatgttaattaacataagaccagtagcagcggctattaaagaa
ttctttggtagttcacaattatcgcaattcatggatcaaactaatccattatcagaactt
acacataaaagaagattatcagcgttggggccaggaggtctttcaagagaaagagctggt
ttcgaagtaagagacgttcaccattcacattatggtagaatgtgtccgattgaaacacca
gaaggtcctaatataggattaataaattcattggctactttcgcaaaggttaatgagtat
ggctttattgaaacaccgtatagaattgtagataaagaaaattcgagagctactgatgaa
attagatattttacagctgacgaagaagatcaatgcttaattgctcaagcaaaaacaccg
atggctgaaaatggtcaattcatagaaaaaagggttacagttaggcatttagatgatgtt
ttagttgtcccagcaacagaagttgatttgattgacgtatctgcaagacaaatggtatct
gtagcaactgctatgattccgttccttgaaaatgatgatgctacaagagcacttatggga
tctaacatgcaacgtcaagcagttccattgttaaatccacaagcaccaattgttggaaca
ggaatagagtttaaagcagctgtagattcaggtgtattgccaaaggcaaaaaatgcaggt
gttgttacttatgtatcaggtagtgaaattagaatcaaaagagattctgatggaggaact
gatatatataagctattaaagtttaagcgaagtaactctggaacatgtataaaccaaaga
cctatagttgatttaggagaattggtttacaagaaccaagtaattgcagatggtccgtct
acagatttaggagaaattgcactaggtaagaatataagaatgggattcataacttgggaa
ggttataattacgaagatgctatgcttatttctgaagaattagtaagagaagatgtattt
acatctatgcatatagaagaatatgaatgtgaagcaagagatactaagcttggaccagaa
gaaatcacaagagatattccaaatgtaagtgaagatgctcttaaagatgtagatgataga
ggtatcataagaattggtgcagaagtaagatcaggagatatattagttggaaaagtaaca
cctaagggtgaaactgaactaactgcagaagaaagattattaagagcaatctttggtgaa
aaagctagagaagttagagatacatctttaagagtacctcatggagaagctggaataata
gttgatattaaagtttttacaagggaaaatggggatgaattaaatcctggagtaaatgaa
cttgtaagatgttatatcgcacaaaaaagaaaaatatctgtaggagacaaaatggctggg
cgtcatggtaataaaggggttatctctagaatattaccagaagaagatatgccgttttta
ccagatggtagaccgcttcaaatatgcttaaatccacttggagtaccttcgcgtatgaat
atcgggcaagtacttgaagtacatttaggttgggcagctagtcatttaggttggcatata
gctacaccagtatttgatggagctactcaagaagaaattacagaatgtttggtaaaagct
ggatttaatgctaatgctaaaactgtattatatgatggtagaacaggagagccttttgac
aatctagtaactgtaggtataatgtatatattaaaacttcaccatttggtagatgacaaa
atacatgcaagatctacaggtccatattcactagttactcaacagccattaggaggtaaa
gctcaatttggaggtcaaagatttggtgaaatggaagtttgggctttagaagcatatggt
gcggcgcatacattacaagaaatattgactgttaaatcagatgatgttgtaggtagagtt
aagacatatgaagctatagtcaaaggtgaaaatatacctgaaccaggagttccagaatca
tttaaggttcttattaaagaacttcaagcattatgcttagatattaaggttttaaatgat
gcaaatgaagaagtgactttaaaagaatttgttgatgaagatatggcaaacctggaagtt
aacatagaaggtactgaagaagtaattatgcaagaaccagaaggaacaatagctgatgat
agttatgatcaaaatccagatgaagatatagatgatattgattatgatgagagtgtcgat
attgaagagcttgagacagaattagaactagatgattttaatgatgaacactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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