KEGG   Clostridium saccharoperbutylacetonicum: Cspa_c32350
Entry
Cspa_c32350       CDS       T02467                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
csr  Clostridium saccharoperbutylacetonicum
Pathway
csr02024  Quorum sensing
csr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Cspa_c32350 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Cspa_c32350 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csr03019]
    Cspa_c32350 (hfq)
   03036 Chromosome and associated proteins [BR:csr03036]
    Cspa_c32350 (hfq)
Messenger RNA biogenesis [BR:csr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Cspa_c32350 (hfq)
Chromosome and associated proteins [BR:csr03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Cspa_c32350 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AGF56996
UniProt: M1MQH4
Position
3518204..3518449
AA seq 81 aa
MVNKQQNNLQDIFLNNARKNKITLVIHLLNGFQLKGVVKGFDNFTVILDCDNKQMLIYKH
SISTITPAKPILFTDSEYVVN
NT seq 246 nt   +upstreamnt  +downstreamnt
ttggttaataagcaacaaaataatctacaagacattttcttaaacaatgcaagaaaaaac
aaaataactttagttatccatttacttaatggatttcagttaaagggtgttgtaaaaggg
tttgataattttaccgttattttagattgtgataataagcaaatgcttatatataaacat
tcaatatcaactataacgccagctaaaccaattttatttacagatagtgaatatgtggtg
aattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system