KEGG   Corynebacterium singulare: CSING_06065
Entry
CSING_06065       CDS       T03630                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
csx  Corynebacterium singulare
Pathway
csx03030  DNA replication
csx03410  Base excision repair
csx03420  Nucleotide excision repair
csx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CSING_06065 (ligA)
   03410 Base excision repair
    CSING_06065 (ligA)
   03420 Nucleotide excision repair
    CSING_06065 (ligA)
   03430 Mismatch repair
    CSING_06065 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csx03032]
    CSING_06065 (ligA)
   03400 DNA repair and recombination proteins [BR:csx03400]
    CSING_06065 (ligA)
Enzymes [BR:csx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CSING_06065 (ligA)
DNA replication proteins [BR:csx03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CSING_06065 (ligA)
DNA repair and recombination proteins [BR:csx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CSING_06065 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CSING_06065 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CSING_06065 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CSING_06065 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH BRCT_2 DZR_2 HMBD
Other DBs
NCBI-ProteinID: AJI78748
UniProt: A0A0B6EV84
Position
1269594..1271618
AA seq 674 aa
MSDAVDIQREWSELAQEVRKHRELYYNGEPSIPDADFDALFQRLLALEAEHPELQTPDSP
TQQVGAAPEGAVDIEHLERLYSLDNVFSADELQDWLDRTPAESYLTELKIDGLSIDLVYR
DGKLASAATRGDGRVGEDITANARVIPDIPHELTGTEEYPVPSVVEVRGEVYMRPDEFEE
INSARREDGKPTFANPRNAAAGGLRMKNPEDVKKRRLHMVCHGIGAREGFEPSSQHDAYL
ALEAWGFPVSPYTKRVTSAKEVQEQVAHWAEHRHDAYFEMDGLVVKVDDLASQRALGATS
RAPRWAIAYKYPPEEVTTKLLNIEVGVGRTGRVTPFAIMEPVFVSGSTVSMATLHNQFEV
KNKNVLIGDTIIIRKAGEIIPEVLGPVLDKRDGSETEWVFPENCPACGTKLAPQKEGDQD
WRCPNTRSCPAQLSARLEYLASRKALDIGELGEKAAADLIASGVLKDEADLFDLDEEALL
KSSMYTTKSGNLNASGKKLLENLKTARETDFWRVLVALSIRHVGPIAARALATRFGSMEA
LRKASVEELADTDGVGGIIAESFKAWFEVDWHDNIVEKWTAAGVTMADEISDKPEQTLEG
LTVVVTGTLEKFTRDSAKEAIITRGGKASGSVSKKTNYVVVGENAGSKEQKARDLGLTIL
DEAGFQRLLETGEA
NT seq 2025 nt   +upstreamnt  +downstreamnt
gtgagtgatgcagtagatatccaacgcgaatggtccgagcttgcccaggaagtgcgtaag
caccgcgagctgtactacaacggcgagccgtcgattccggacgcggactttgacgcgctt
ttccagcgtttgctggcactggaagcagagcacccggagctgcagactcctgattcgcct
acccagcaggtaggcgcagccccggagggtgctgtagacatcgagcaccttgagcgcttg
tacagcttggacaatgtcttcagtgcggatgagctgcaggactggctcgaccgtacgccg
gcggagtcctacctcaccgagctgaagatcgacgggctgtccattgacttggtgtaccgc
gatggcaagcttgcctcggccgctacgcgaggcgatggccgtgtcggcgaggacatcact
gccaatgcgcgcgtcattcctgatattccacacgagctgaccggcaccgaagagtatccg
gtgccctccgtggtggaggttcgcggcgaggtgtacatgcgcccggatgagtttgaggag
attaactccgcacgccgtgaagatggcaaacccacgtttgccaacccgcgcaacgcggcc
gcaggcggtttgcgcatgaagaacccggaggacgtgaaaaagcgccgccttcatatggtg
tgccacggtatcggtgcgcgcgaaggttttgaaccttcctcgcaacacgatgcttacctg
gcactagaagcgtggggattccccgtctcgccgtacaccaagcgcgtgaccagcgccaag
gaagtccaggagcaggttgcacactgggctgagcaccgccatgatgcatattttgaaatg
gatggtcttgtggtcaaggttgatgacttggccagccaacgcgcgctgggagcaacctct
agggcaccacggtgggctattgcgtacaagtacccgccggaagaagtgaccaccaagctg
ctcaacattgaggtaggcgttggccgcacgggacgtgtgacgccctttgccattatggag
ccggtgtttgtgtccggttcaaccgtgtctatggctaccctgcacaaccagttcgaggtc
aagaacaagaacgtcctcatcggggataccatcatcatccgcaaggctggcgaaattatt
ccggaggtcctcggcccggtgctggacaagcgtgatggtagcgagaccgagtgggttttc
ccagagaactgcccggcctgcggcacgaagctggctccgcagaaggaaggtgaccaggac
tggcggtgcccgaacactcgcagctgcccggctcagctttctgcccgcctcgagtatctg
gcatcccgcaaggcgcttgacataggcgagttaggggagaaggctgcggcagaccttatc
gcctccggcgtgcttaaagatgaagcggatctctttgaccttgatgaggaagcactgctg
aagtcttcgatgtacacgacgaagagcggtaacctcaatgcctctggcaagaagctgctg
gagaaccttaagaccgcccgcgagactgatttctggcgcgtgctcgtggccttgtccatt
cgccatgtgggtcccatcgcggctcgtgcgttggcgactcgctttggctcgatggaggcg
ctgcgcaaggcttccgtcgaggagctcgccgataccgatggcgtgggcggaatcatcgcg
gaatcctttaaagcctggttcgaagtggactggcacgacaacatcgtcgagaagtggact
gcagcgggtgtgaccatggctgatgaaatcagcgataaaccggaacaaaccctagagggt
ctcaccgtggtggtcaccggcacgctcgaaaaattcacgcgtgattccgccaaggaggcc
atcattacccgtggtggcaaggcttctggctcggtatctaagaagaccaactatgttgtt
gtgggcgagaacgctggatccaaggaacaaaaagcccgtgacctggggctcaccatcctt
gatgaagcgggattccagcgtcttctggaaacgggcgaggcatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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