KEGG   Corynebacterium testudinoris: CTEST_05085
Entry
CTEST_05085       CDS       T03956                                 
Name
(GenBank) ATP-dependent RNA helicase CsdA
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
cted  Corynebacterium testudinoris
Pathway
cted03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cted00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CTEST_05085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cted03019]
    CTEST_05085
   03009 Ribosome biogenesis [BR:cted03009]
    CTEST_05085
Enzymes [BR:cted01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CTEST_05085
Messenger RNA biogenesis [BR:cted03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CTEST_05085
Ribosome biogenesis [BR:cted03009]
 Prokaryotic type
  rRNA helicases
   CTEST_05085
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 UvrA_inter adh_short
Other DBs
NCBI-ProteinID: AKK08464
UniProt: A0A0G3H4X0
Position
1027164..1029329
AA seq 721 aa
MSITDNATGGVHEPDDLSTSESQENPQGDAASAASAATGPLTIEDVIDPDVPAQGDQDTR
DADTSEATGSETEEFSDNDDTIDTAADKAVDASEDAGDDQDDEHGFANLGLPSAVLNAVK
KVGYETPSAIQAQTIPVLMEGNDVVGLAQTGTGKTAAFALPILARIDMQDRSPQALVLAP
TRELALQVADSFQSFADHLGKISVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRIIDHLEK
GSLDISRLRFLVLDEADEMLNMGFQDDVERILEDTPEDKQVALFSATMPNGIRKISKQYL
QDPREISVKSETRTATNITQRFLNVAHRNKLDAITRILEVTEFEAMIVFVRTKHETEEIA
EKLRARGFSAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRISHVFNFDI
PNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRAIERATNAPLTEMELPTVDEVNES
RKGKFMDSITESLESKQIDLFRGMIKSYAEEHDVPVEDIAAALASQAQAGSDFLMKEAPP
EKRRERNDRDRGDRGGRFDRDRGGRFDRDDRGGDRGSRFDRDGDFSTYRLAVGKRHNVRP
GAIVGALANEGGLTSKDFGRITIAVDHTLVELPKDMDKSVLGRLSDTRISGQLINIEPDS
GGRPPRRFERDDRGGRGGDRGGFRGGRDRDDRGGRGGYRGNRDDRGGRDRNDRGGRGGWR
D
NT seq 2166 nt   +upstreamnt  +downstreamnt
atgagcattaccgataacgccaccggcggcgtacatgagccggatgacctaagcacgtcg
gaatctcaggaaaacccgcaaggtgatgcagcttctgctgcttccgccgccaccgggccg
ctgaccatcgaggatgttattgatcccgatgtcccggcccagggcgatcaggacaccagg
gacgcggatacttctgaggccaccggctccgagaccgaagaattctcggacaacgatgac
actattgataccgctgccgacaaggcagtagacgcctcagaagacgctggcgatgaccag
gatgacgaacacggtttcgccaacctcggcctgccctccgccgtcctcaacgcggtgaag
aaggtcggttacgagaccccttccgccatccaggcgcagaccatcccggttctcatggaa
ggcaacgacgtcgtcggcctcgcccagaccggtaccggcaagaccgcagccttcgcgctg
ccgatcctcgcccgcattgacatgcaggaccgctcgccccaggcgctggtcctcgccccg
acccgcgagctcgcgctccaggtcgccgattctttccagtccttcgctgaccacctcggc
aagatcagcgtcctgccgatctacggtggccaggcctacggcatccagctctccggcctg
cgccgcggtgctcagatcatcgttggcacccccggtcgaatcatcgaccacctggaaaag
ggatccctcgacatctcccgtctgcgcttcctcgtcctcgatgaggccgatgagatgctc
aacatgggcttccaggacgatgttgaacgcatcctcgaggacacccccgaggacaagcag
gtcgccttgttctctgcaacgatgcccaacggcatccgcaagatctccaagcagtacctg
caggatccgcgcgaaatctcggtcaagtccgagacccgcacggccaccaacatcacgcag
cgcttcctcaacgtcgcgcaccgcaacaagctcgacgcgatcacccgcatcctcgaggtc
accgagttcgaagcaatgatcgtcttcgtgcgcaccaagcacgagaccgaagaaatcgcc
gagaagctccgcgcccgcgggttctccgccgccgccatcaacggcgacatcgcacagaac
cagcgtgaacgcaccgtcgatcagctcaaggacggccgactggacatcctggtcgcaacc
gacgttgccgcccgcggcctcgacgtcgaccgcatcagccacgtgttcaacttcgacatc
ccgaacgacaccgagtcctacgtccaccgcatcggccgcaccggccgcgccggccgcacc
ggcgaggcaatcctcttcgtcaccccgcgtgagcgccgcatgctgcgcgccatcgagcgc
gccaccaacgcgccgctcaccgagatggaactgcccacggtcgatgaggtcaacgaatcc
cgcaagggcaagttcatggactccatcaccgagtccctcgagtccaagcagatcgacctg
ttccgcggcatgatcaagtcctacgccgaagaacacgacgttcccgtcgaagacatcgcc
gcagccctggcctcccaggcacaggccggcagcgacttcctcatgaaggaagccccgccg
gagaagcgccgcgagcgcaacgaccgcgatcgcggcgaccgtggtggtcgcttcgaccgt
gaccgtggcggccgtttcgatcgcgatgatcgtggcggagaccgtggctcccgcttcgac
cgcgacggtgacttctccacctaccgtctcgccgtgggcaagcgccacaacgtacgccca
ggtgccatcgtcggcgccctggccaacgagggtggcctcacctccaaggacttcggccgc
atcaccatcgccgtcgaccacaccctggtcgaactgccgaaggacatggacaagtcggtc
ctgggccgcctgtccgatacccgcatctccggtcagctcatcaacatcgagcccgactcc
ggtggacgccccccgcgtcgctttgagcgcgacgaccgtggtggtcgtggcggagaccgc
ggtggtttccgcggtggacgtgaccgcgacgatcgtggtggacgcggtggataccgtggc
aaccgcgatgaccgtggcggacgcgaccgcaatgaccgcggtggacgtggcggttggcgc
gactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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