KEGG   Comamonas testosteroni TK102: O987_11935
Entry
O987_11935        CDS       T03218                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ctes  Comamonas testosteroni TK102
Pathway
ctes03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ctes00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    O987_11935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ctes03400]
    O987_11935
Enzymes [BR:ctes01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     O987_11935
DNA repair and recombination proteins [BR:ctes03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      O987_11935
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID MFD_D3 ResIII UB2H Glyco_tran_WecG ERCC3_RAD25_C AAA_30 IstB_IS21
Other DBs
NCBI-ProteinID: AIJ46504
UniProt: A0A076PIA1
Position
complement(2548744..2552235)
AA seq 1163 aa
MQLPKLTPGKRFHLPRPVGSADALLLARLGEREKQDGRVTAIVTADAADAHRLMEEMAFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRINQRDRQHGADVVIVPATTALYRL
APPSFLAGYTFEFKQGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPMGSL
QPYRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEEARAKFRSRWRELLEG
DPTRSRIYKDMGAGIATAGIEYYLPLFFDETATVFDYLGDEATVVLHGDLEPAFQRFWQD
TKDRYRLVQGDPDHPALPPETLFLSADQFYTRSKEHAQLALRPGTEDVADSAIFQKLEDL
SVLRGADDPLAKLQKHIAAGTSRVLLLAESDGRRESLLDFFRASGVNPPVFDSLAEFQAD
ATEKVGIATSSLMTGFAWVEEGLDFVTETELFASSPTGRRRRRQEQVSDVEALIKDLSEL
KVGDPIVHADHGIGRYRGLINMDMGQKNPDGTPALQEFLHLEYAADAVLYVPVSQLHLIS
RYTGVSPDDAPLHKLGGTQWEKAKRKAAEQVRDSAAELLNIYARRAARQGHAFRFPTADY
EQFVADFGFEETADQRAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAAMGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAIKGISDGTVDIVVGT
HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL
RDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQIYFLHNEVETIENRKQKLE
EILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDLDGLTKQAQQRLEAIQQMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMLEVGFQLYNEMLSEAVRSLKAGKEPDLLSPLSASTDINLHAPA
LLPNDYCGDVHLRLSFYKKLATAKTADQIDTLLEEIVDRFGKLPPQAQTLIDVHRLRVLS
QPYGVVKVDAAPGVINISFKPQPPIDPMNIIHLIQKNKHIKLAGNEKLRIEKELENPKDR
AQMVRDVLRSLGQPLKSETAVHA
NT seq 3492 nt   +upstreamnt  +downstreamnt
atgcaactgcccaagctcacccccggtaaacgctttcacctgccccgccctgttggcagc
gccgacgcgctgctgctggccaggctgggcgagcgtgaaaagcaagacggccgggtcacg
gccatcgtcacggccgatgccgccgacgcccatcgtctcatggaggagatggccttcttc
gcccccgagctgcgctgcgcattgttccccgactgggaaaccctgccctacgacagcttc
tcgccgcaccaggatctgatcagcgagcgcctggccacgctgtggcgcatcaaccagcgc
gacaggcagcatggcgccgacgtggtcatcgtgcccgccaccacggccctctatcgcctg
gcccccccctcgtttctggctggctatacctttgaattcaagcagggccagaagctcgac
gaggcaaagctcaaggcccagctcacgctggcgggctaccagcatgtgtcccaggtggtc
agccatggcgaatacgcggtacgcggcggcctgattgacctgttccccatgggttcgctc
cagccctaccgcgtggacctgttcgacgacgagatcgactccatccgcaccttcgacccc
gacacgcaacgcagcctctaccccgtgcccgaggtgcgtctgctgcccggccgcgaattc
ccgatggacgaggaagcgcgcgccaagttccgcagccgctggcgcgagctgctcgagggc
gacccgacacgcagccgcatctacaaggatatgggtgccggcattgccacggccggcatc
gagtactacctgccgctgttcttcgacgaaacagccactgtctttgactatctgggcgac
gaggccaccgtggtgctgcacggcgatctggagccggccttccagcgcttctggcaggac
accaaggaccgctaccgcctggtgcaaggcgatcccgaccacccggcgctgccgcccgag
acgctgtttctcagcgccgaccagttctatacccgcagcaaggagcatgcccagctggca
ttgcggccgggcaccgaagatgtggccgacagcgccatcttccagaagctcgaagacctt
tccgtgctgcgcggagccgatgacccgctggccaaactgcaaaaacatatagcagccggc
acaagccgggtcttgcttctggccgaatccgacggcaggcgcgagagcctgctcgacttt
ttccgcgcttcgggcgtcaacccgcccgtgttcgattctctggccgagttccaggccgat
gccacggaaaaggtcggcatcgccacctccagcctgatgacgggctttgcctgggtcgag
gaaggcctggacttcgtcaccgaaaccgagctgtttgccagcagccccacgggccgccgt
cgccgccgccaggagcaggtcagcgatgtggaggcactgatcaaggacctgtccgagctc
aaggtaggagaccccatcgtccatgccgaccacggaataggccgctatcgcgggctgatc
aatatggacatgggccagaagaacccggacggcacgcccgcgctgcaggaatttctgcac
ctggaatatgcggccgatgccgtgctctatgtgcccgtcagccagttgcacctgatcagc
cgctacaccggcgtctcgcccgacgatgcgccgctgcacaagctgggcggcacgcaatgg
gagaaagccaagcgcaaggccgccgaacaggtgcgcgactcggccgccgaactgctcaat
atctacgcccgccgtgccgcgcgccagggccatgccttccgcttccccacggccgactac
gagcagttcgtggccgacttcggcttcgaggaaacggccgaccagcgcgccgccatccac
gccgtggtgcaggacatgatcagcccccagcccatggaccgcctggtctgtggcgatgtg
ggcttcggcaagaccgaggtcgcactgcgcgcggcctttgtggcggccatgggcggcaag
caggtcgccttcctggcccccaccacgctgctggccgagcagcattaccagaccctggtg
gaccgcttctccaaatggccgatcaaggttgccgaggtgtcgcgctttcgctcgggcaag
gagatcacggcggccatcaagggcatctcggacggtacggtggatatcgtggtcggcacg
cacaagctgctgtccgagtccacgcagttcaagaacctgggcctgctcatcatcgacgag
gaacaccgctttggcgtgcgccacaaggaggccatgaaggccatgcgcgccgaggtcgat
gtgctgacgctgacggccaccccgatcccgcgcaccatgggcatggcgctggagggtctg
cgcgacctgtcggtgatcgccacggcgccgcagcggcgcctggccatcaagacctttgtg
cgcaacgagggcacgggcgtgattcgcgaagccgtgctgcgcgagctcaagcgcggcgga
cagatctacttcctgcacaacgaggtcgagaccatagagaaccgcaagcagaagctggag
gaaatactgcccgaagcacgcatcgccgtggcccacggccagatgcccgagcgcgagctg
gaacgcgtgatgcgcgatttcgtggcccagcgctacaacatattgctgtgctcgaccatc
atcgagaccggcatcgacgtgccatcggccaacaccattctcatcagccgtgccgacaag
ttcggtctggcccagttgcaccagctgcgcggccgcgtgggacgcagccaccatcaggcc
tatgcctatctgatggtgccggacctggacggcctgaccaagcaggcccagcagcgactg
gaggccatacagcagatggaggagctgggctcgggcttctatctggccatgcacgacctg
gaaattcgtggcgccggggaggtgctgggcgaaaaccagagcggcaatatgctggaggtg
ggctttcagctctataacgagatgctgtccgaggccgtgcgcagcctcaaggccggcaag
gaacccgatctgctctcgccgctgtcggcctccaccgacatcaatctgcacgccccagcc
ctgttgcccaacgactactgcggcgacgtgcatctgcgcctgtcgttctacaagaagctg
gccacggccaagacggccgatcagatcgataccctgctcgaggaaatcgtggaccgcttc
ggcaagctgccgccccaggcgcagaccctgatcgacgtgcaccgcctgcgcgtgctgagc
cagccctatggagtggtcaaggtcgatgccgctcccggcgtgatcaacatcagcttcaaa
ccccagccgccgatcgatcccatgaacatcattcacctgatccagaagaacaagcacatc
aagctggcgggcaacgagaagctgcgcatcgaaaaagagctggagaaccccaaggaccga
gcccagatggtgcgcgatgtgctgcgcagcctgggtcagccgctcaagagcgaaacagct
gttcatgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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