KEGG T00702: RALTA

Cupriavidus taiwanensis: RALTA_B0290

Entry

RALTA_B0290 CDS T00702

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

cti Cupriavidus taiwanensis

Pathway

cti03410	Base excision repair
cti03420	Nucleotide excision repair
cti03430	Mismatch repair
cti03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:cti03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:cti03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:cti03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:cti03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

188592127

NCBI-GeneID:

6302601

UniProt:

B2AI89

Position

2:complement(312386..314923)

AA seq 845 aa
MAGRKPRATVAARHGGTAPAGGLERYSKKRNFGVTPEPSGKAAPPRPRQEAGPLRFVVQK
HWARRLHYDFRLELGGVLLSWAVPKGPCYDPAEKRIAVHVEDHPLDYAGFEGEIPPNQYG
AGSVIVWDRGTWTPVGDPHDGMAAGKLVFDLHGEKLTGRWELVRIAKPDDRSEQWILFKK
RDAWARPLAEFDVLAALPDSVIARPLGAVPEASGVPDQDDPDQAMRHAPRAPLPAKLRPQ
LATLSPTLPSGTGWIIETKFDGYRILARIDDARATLFTRNGHDWTRRLISLAAEIEKLDI
SQGWLDGEIVVLRDDMPDFNALQNAIDGHRHEAIVYFAFDLPYWEGRDLREVPLMQRRAK
LAALVAGRSERVRFSEAFDAPPAQMFQAACRLGLEGLIFKRADSPYVSARTQSWLKAKCK
LRQEFVIGGFSDREGAAAEVGRLYLGVYADGALVYAGGVGTGWDSATATDLRKRLAALKV
KDSPFATEARGSGRWGGRRPAVVRWVRPKLVAEVEFTEWTPDGQVRHASFKGLRTDHTVK
SIRREPVQTAVTPHGVAAIKVTNPERVIDRSKGITKVELVRYYESVAAVMLPHLADRPLS
LVRAPEGIDAPTFFQKHAETAMPGLTEQPVSLWPGHAALLTADSPEAIVAAAQMNVVEFH
TWNSTARDIDHPDRVIFDLDPGEGVAWESMLEAAMLVRTLLDELGLQCWLKTSGGKGLHV
VVPLAPRRSYDEVKAFSHAAVKHLAATLPQRFTARSGAANRKGRIFVDYLRNGFSQTTAA
AFSARARPGLGVSMPVSWEQLSRLKSGAQWTIRDAREYLSFQLADPWQSYWQTRQTLTEA
IERLS

NT seq 2538 nt +upstreamnt +downstreamnt
atggcaggccgcaagccccgcgctaccgtcgccgccaggcatggcggcacggcgcccgct
ggcggcctcgagcgttacagcaagaagaggaatttcggcgtcacgcccgaacccagcgga
aaggcagcgccgccccggccgcgccaggaagcggggccgctgcggttcgtcgtccagaag
cactgggccaggcgcctgcactacgatttccggctcgagctcggcggcgtgctgctcagc
tgggcggtgccaaagggaccgtgctacgacccggccgagaagcgcatcgccgtccatgtc
gaagaccacccgctcgactatgccggcttcgaaggcgagatcccgccgaaccagtatggc
gccgggtcggtgatcgtctgggaccgcggcacgtggacgccggtgggcgacccgcatgac
ggcatggccgccggcaagctggtctttgacctgcacggcgaaaagctgacgggtcgctgg
gaactggtgcgcatcgccaaaccggacgacaggtccgagcaatggatactcttcaagaag
cgcgacgcctgggcgcgtccgctggcagaattcgatgtcctggccgcgctgcccgacagc
gtcatcgccaggccgctgggcgccgtgcccgaggcctccggcgtcccggaccaggatgat
ccggaccaagccatgcggcatgcgccgcgcgcgccattgccggcaaagctgcggccccag
cttgccacgctctcgcccaccctcccttccggcaccggctggatcatcgaaaccaagttc
gacgggtaccggatcctggcaaggatcgacgatgcccgggcaacgctgttcacccgcaac
gggcatgactggacgcgcaggctgatctcgctggcggcggaaatcgagaagctcgatatc
tcgcagggctggctggatggcgagatcgtcgtgctgcgcgacgacatgccggatttcaac
gcgttgcagaacgccatcgacgggcatcgccatgaggcgatcgtgtacttcgccttcgat
ctgccctactgggaaggccgcgacctgcgcgaggtgccgctgatgcagcgccgggcgaag
ctcgccgcactggttgccggccgctccgagcgggtgcgcttcagcgaagccttcgacgcc
ccgcctgcgcagatgttccaggcggcatgccggctcggcctggagggcctcatcttcaag
cgcgccgattccccttatgtctcggctcgcacgcagagctggctgaaggcgaaatgcaag
ctgcgccaggagttcgtgatcggcggattctcggaccgcgaaggcgccgccgccgaggtg
ggcaggctgtatctgggcgtctacgcggatggcgccctggtttatgcgggcggcgtgggc
accggctgggacagtgccaccgccacggacttgcgcaagcgcctggcggcattgaaagtg
aaggacagtccgtttgcgaccgaggcccgcggcagcggacgctggggcggccgacggcct
gccgtggtccgctgggtccggcccaagctggtcgctgaggtggagttcaccgagtggaca
ccggacgggcaggttcgccacgcgtcattcaaagggctgcgcacggaccacacggtcaag
tcgatccggcgcgagccggtgcagaccgcggtcacgccgcatggcgttgccgccatcaag
gtcaccaatcccgagcgggtgatcgaccggtccaaaggtattaccaaggtggaactggtg
cgctactacgagagcgtcgccgccgtgatgctgccgcacctggcggatcgcccgctctca
ctggtgcgcgcgccggagggcatcgacgcgcccacgttcttccagaagcatgccgagacg
gccatgcccggcctcaccgagcagccggtctcgctgtggcccggccacgcggccctgctg
accgccgactcgcccgaagccatcgtcgcggccgcccagatgaacgtggtggagttccac
acctggaattccaccgcgcgcgatatcgaccatccggaccgggtgatcttcgacctggac
cccggcgaaggcgtggcgtgggagagcatgctggaagccgccatgctggtgcgcacgctg
ctggacgaactgggcctgcagtgctggctcaagaccagcggcggcaagggcctgcatgtc
gtcgtgccgctggcaccgcggcgatcctacgacgaagtgaaggcgttttcacatgcggcg
gtcaagcacctggccgccacgctgccccagcgcttcaccgcccgctccggcgccgccaac
cgcaaggggcgcatcttcgtggattacctgcgcaacggcttctcgcagaccaccgccgcc
gcgttctcggcacgtgcgcggccgggccttggcgtgtccatgccggtgtcgtgggaacaa
ctttccaggctgaaaagcggcgcgcagtggactatccgcgatgcgcgcgagtacctgagc
ttccagctggcggacccctggcagtcgtactggcagacacgccagactttgacggaggcc
atcgaacgcttaagctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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