KEGG T00702: pRALTA

Cupriavidus taiwanensis: pRALTA_0093

Entry

pRALTA_0093 CDS T00702

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

cti Cupriavidus taiwanensis

Pathway

cti03410	Base excision repair
cti03420	Nucleotide excision repair
cti03430	Mismatch repair
cti03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:cti03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:cti03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:cti03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:cti03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

188591399

NCBI-GeneID:

6301901

UniProt:

B2AJW4

Position

pRALTA:complement(88395..90932)

AA seq 845 aa
MATTHARRRTKRGETEPSPPLERYEKKRDFSITPEPAGRKARRKKPARLSFVIQKHWARR
LHYDFRLELDGVLLSWAVPKGPSYDPAEKRIAIHVEDHPLDYAAFEGEIPPKQYGAGSVI
VWDRGTWVPVGDPREGMAAGKLLFDLHGEKLAGRWELVRIAKPGDKSEQWILFKKRDAWA
RTLSEFDVLTALPDSVIAKPLGALNAEDGDKESVAVLDEDPATAVKRAPRAPLPAKLAPQ
LATLSPTLPAGTGWIIENKFDGYRILARISDAGVTLFTRNGHDWTRKLASLAAEIEKLDI
SEGWLDGEIVVLRDGVPDFNALQNAIDGHRNDAIVYFAFDLPYLEGRDLRSLPLVQRRAQ
LAALVAERTERVRFSEAFDAPATQMFQAACQLGLEGLMFKRADSPYVSARTQSWLKAKCK
LRQEFVIGGYSDREGSRTEVGRLYLGVYADGELRYTGGVGTGWDSAAATDLRKRLVKLQV
DKSPFSTEARASRRWGGRRATAVQWVKPTLVAEVEFSEWTPEGHVRHASFKGLRTDHAAK
SIRREAVQTAVTPHGMAAIKVTNPERVIDKTEGITKVELVRYYESIAMLMLPHLKDRPLS
LVRAPEGIDAPTFFQKHAETAMPGLTERPASLWPGHAALLTADSAEAIVAAAQMNVVEFH
TWNSTARDIDHPDRVIFDLDPGAGVAWETMLEAAMLVHALLDELGLQSWLKTSGGKGLHV
VVPLAPQHSYDEVKAFSRAAVQHLAATLPQRFTARSGATNRKGKIFVDYLRNGFSQTTAA
AFSARARPGLGVSMPVSWEQLPKLKSGGQWTIRDAREYLSFQVADPWSSYWETPQMLTDA
IERLS

NT seq 2538 nt +upstreamnt +downstreamnt
atggccacaacccacgcgaggcgcagaaccaagcgcggcgagacggagccatcgccgccg
cttgagcgctatgagaagaagcgcgatttcagcatcacccctgagccagcgggacggaaa
gcgcggcgaaagaagccagcacgcttgagcttcgtcatccagaagcattgggctcgccga
ctgcactacgactttcggttggagctcgatggcgtgctgctcagctgggccgtgccaaag
ggaccgagctacgatcctgcggaaaaacgtatcgccatccatgtcgaagaccacccgctc
gactatgccgcattcgaaggcgaaatcccgcccaagcaatacggcgccggatcggtgatt
gtttgggaccgcggcacctgggtaccggtcggcgatccccgcgaaggcatggccgcgggc
aagctactcttcgatctccacggcgaaaagcttgccggccgctgggaactggtgcgcatc
gccaagcccggcgacaaatccgagcagtggatcctgttcaagaaacgcgacgcgtgggcg
cgcacgttgtcggaattcgatgtgctgacggcgctgccggacagcgtcatcgccaagccc
ttgggcgcgctcaatgcagaggatggcgacaaggaatctgtcgcggtcctcgacgaggat
cccgccaccgccgtcaagcgcgcgccccgtgccccgctgcccgcaaagctcgccccgcaa
ctggccacgctgtcgccaacacttcccgccggcaccggctggatcatcgagaacaagttc
gacggctaccggatcctggccaggatctccgacgccggggtcacgctctttacccgaaat
gggcatgactggacccggaagctggcttcgctggcggcggagatcgagaagctggacatc
tcggaaggctggctggacggcgagattgtcgtgctgcgcgacggcgtgccggatttcaac
gccttgcagaatgccattgacggccatcgcaatgacgccatcgtctacttcgccttcgac
ctgccctacttggaaggccgcgatctgcgcagcttgccgctggtgcagcgccgggcccaa
ctggccgcgctggtcgcggagcgcacggagcgcgttcgcttcagcgaagccttcgacgcg
ccggcgacccagatgtttcaggcggcgtgccagctcggcctggaaggcttgatgttcaag
cgcgcagattcgccctatgtctcggcacgtacgcagagctggctgaaggcgaagtgcaag
ctgcgtcaggagttcgtcattggtggctattccgatcgcgaaggctcccgtactgaggtc
ggcagactctatcttggcgtctacgccgacggcgaactgcgttacaccggcggcgtcggt
acgggctgggacagcgccgcggcgacggacctgcgcaagcggctcgtgaaactgcaagtg
gacaaaagcccattttcgacggaagcccgagcgagccgtcgatggggaggccgccgcgcc
accgctgtgcaatgggttaagccgacgctggtcgccgaagtggaattctccgagtggacg
cccgaaggccatgttcgccacgcctcgttcaagggcctgcgcaccgaccatgccgcgaag
tcgatccggcgcgaagcggttcagaccgccgtgacaccccacggcatggccgcgatcaag
gtcacgaatcccgaacgcgtgatcgacaagaccgagggcatcaccaaagtcgaactggtg
cgctactacgagagcatcgcgatgctgatgctgccccatctgaaggaccgcccgctatcg
ctggtgcgcgccccggagggcatcgatgccccgacgttcttccaaaagcatgccgaaacc
gcgatgccggggctgaccgagcggccggcgtccctatggccgggacatgccgcgctgctg
acggccgactcggccgaagcgattgtcgcggccgcccagatgaatgtggtggagtttcac
acctggaactccactgcccgcgacatcgaccatcctgaccgggtcatcttcgacctcgat
cccggcgcaggcgtcgcttgggagacgatgctcgaggccgccatgttggtgcacgcgctg
ctggacgaactgggcctgcagtcgtggctgaagacgagcggcggcaaggggctacacgtc
gtcgtgccgctggcaccgcagcattcctacgatgaggtgaaagccttctcgcgggctgca
gttcagcatctggccgccaccctgccccagcgcttcaccgcacgttccggcgccaccaac
cgcaagggaaagatcttcgtcgactacctgcgcaatggcttctcgcaaaccaccgccgcc
gcgttctcagcgcgtgcccggcccggacttggggtctcaatgcctgtgtcgtgggagcag
ttgccgaaactcaagagtggcgggcaatggacgatccgggatgcccgtgaatatctgagc
ttccaggtcgcggacccatggtcgtcctattgggaaaccccacagatgttgaccgacgcg
atcgaacggctaagttaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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