KEGG   Candida tropicalis: CTRG_03518
Entry
CTRG_03518        CDS       T01115                                 
Name
(RefSeq) exosome complex exonuclease RRP44
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
ctp  Candida tropicalis
Pathway
ctp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ctp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CTRG_03518
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctp03019]
    CTRG_03518
Messenger RNA biogenesis [BR:ctp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     CTRG_03518
SSDB
Motif
Pfam: RNB Rrp44_CSD1 Rrp44_S1 PIN_4 OB_Dis3 CSD2 Dis3l2_C_term TSNR_N
Other DBs
NCBI-GeneID: 8298045
NCBI-ProteinID: XP_002549221
UniProt: C5MBS6
Position
Unknown
AA seq 989 aa
MTVAAVNNRKRLSSGLSVTSKVFVRSRNGGALKIVREHYLRNDIPCYSTICNTCQEIIKP
DANGELPRFILSSTPTTTAKGEPHYLVLDTNIILHAIDLLENTQCFYDVIIPQTVLEEVK
NRSFPIYQRLRNLVKSEDKRFIVFHNEYNEETYITRNKNESINDRNDRAIRKVAQWFNNH
LPTIKTFLICNDKDNRTKAINEGIEAKSLYEYIDILPNGEDLKDLIPQYDSKFTKNEDGE
VNETSFPEYYSNSRIMAGIKNGTLYQGILNISSYNYLQGEVSVPAFKKPLLIQGSKNLNR
AFNSDSVIVELLPKDKWKEPSTTIIEEETIGANDNAGNDDIEEDEVTQSVVSDKERIILA
QEAMKVTSSNNDEKRLQPTAKIVGIMRRSWRYYVGQIAPSSVNIDETTGNASKNCFVILM
DPKLPKIRIRTRKAKEYLGQRIVVVVDSWPINSRYPNGHFVRALGAIESAEAETEALLLE
HDVEYRPFSKNVLDCLPKEGDNWVVPQDLENTDDVQLQKRVDLRDKLVCSIDPPNCVDID
DALHAKQLPNGNYEVGVHIADVTHFVKPNTSLDQEGASRGTSVYLVDKRIDMLPQLLGTN
LCSLKPFVERFAFSVIWEVDEDANIVNVNYMKSIIKSRQAFSYEQAQMRIDDPNQQDELT
NSMRILLKLSKKLKQKRLDAGALNLASPEVKVHMDSETSDPQEVEIKKLLETNSLVEEFM
LFANISVARKIYDAYPQTAMLRRHAPPPATNFETLNDMLNVRKNGMSISLESSKALADSL
DRCVDSKDPYFNTLVRIMSTRCMMAAEYFPSGSYGYPEFRHYGLAVDIYTHFTSPIRRYC
DVVAHRQLAGAIGYETLDLSHRDKSKMEMIVKNINRRHRNAQFAGRSSIEYYVGQVMRNN
EAEHEGYVIKIFNNGIVVLVPKFGVEGLIKLEHMGDVNSANYDEDKYELTFKDHNGNERK
VAVFDKVKVDVKSVKDEISGKRKAQLMLK
NT seq 2970 nt   +upstreamnt  +downstreamnt
atgacagttgcagcagttaataatagaaagagattatcaagtggattaagtgtcacttct
aaggtttttgtaagatcaagaaatggaggtgcattaaagattgttcgtgaacattatttg
agaaatgatattccatgttattcaactatttgtaatacatgtcaagaaataattaaacct
gatgccaatggtgaattacctagatttatattatcttcaactcctacaactactgcaaag
ggtgaacctcattatttagtattagatacaaatatcattttacatgctatagatttatta
gaaaatactcaatgtttttatgatgtaattattccacaaaccgttttggaagaagttaaa
aatagatcatttccaatttatcagagattaagaaatttagttaaatcagaagataaaaga
tttattgtattccacaatgaatataatgaagaaacatacatcaccagaaataaaaatgaa
tcaattaatgatagaaatgatagagctattagaaaagtagcccaatggttcaataatcat
ttaccaacaatcaaaacatttttaatttgtaatgataaagataacagaacaaaagcaatt
aatgaaggcattgaagcaaaatcattatatgaatatattgatatattaccaaatggagaa
gatttgaaagatttgattcctcaatatgattccaaatttactaaaaatgaagatggtgag
gttaatgaaacttcattccccgaatattattcaaattcaagaattatggcaggtattaaa
aatggtactttatatcaaggtattttaaacatttcatcttataattatttacaaggtgaa
gtactggtacctgctttcaagaaacctttattgattcaaggatctaagaatcttaatcgt
gcttttaattctgattctgttattgtggaattattacctaaagataaatggaaagaacca
tcaactaccatcattgaagaagaaaccattggtgctaatgataatgcaggtaatgatgat
attgaagaagatgaagtaactcaaagtgttgtttcagataaagaacgtattattttagca
caagaagctatgaaagttactagttctaacaatgatgaaaaaagattacaaccaacagct
aaaatcgttggtataatgagaagatcatggagatactatgttggtcaaattgccccttct
tcagttaatattgatgaaaccacaggtaatgcaagtaagaattgttttgttatattgatg
gatccaaaattaccaaaaattagaatcagaacaagaaaggcaaaagagtatttaggacaa
agaattgttgttgttgttgattcttggccaattaattccagatatccaaatggtcatttt
gttagagcattgggagctattgaaagtgccgaagctgaaactgaagctttgttattagaa
catgatgttgaatatagaccattctccaagaatgttttggattgtttgccaaaagaaggt
gacaattgggttgttccacaggatcttgaaaacacagatgatgttcaattgcaaaagaga
gtcgatttaagagataaattagtttgttctattgatcctccaaattgtgttgatatcgat
gatgctttacatgctaagcaattacctaatggaaattatgaagttggtgttcatattgct
gatgtcacccatttcgttaaaccaaatacatctttggaccaggaaggtgcttctagaggt
acatctgtttatttagtggacaagagaattgatatgttgcctcaattgttaggtactaat
ttatgttcattaaaaccatttgttgaaagatttgcctttagtgttatttgggaagttgat
gaagatgccaatattgtcaatgttaactacatgaaatctataattaaatctagacaagct
ttttcatatgaacaagcacaaatgagaattgatgatcctaatcaacaagatgagttgaca
aattccatgagaattttgcttaaattgtcaaagaaattaaaacaaaagagattggatgca
ggtgcattgaatttagcatctccagaagtcaaagttcatatggatagtgaaacttcagat
ccacaagaagttgaaatcaagaaattattagaaaccaattctttagttgaagaatttatg
ttgtttgctaacatttccgttgctagaaaaatttatgatgcatatccacaaacagctatg
ttaagaagacatgctccaccaccggcaacaaatttcgaaactttgaatgatatgttgaat
gttcgtaagaatggtatgtctatttctttagaatcttcaaaagctttggctgattcttta
gatagatgtgttgattcaaaagatccatatttcaatactttggttcgtattatgtctact
cgttgtatgatggctgcagaatatttcccaagtgggtcatatggttatcctgaatttaga
cattatggtttagctgttgatatctatacacatttcacttcaccaattagaagatattgt
gatgttgttgctcatagacaattggccggtgctattggttatgaaaccttggacttgagt
catcgtgataagtcaaagatggaaatgattgtaaagaatatcaatagacgtcatagaaat
gctcaatttgctggtagatcaagtatagaatattatgtcggacaagtgatgagaaataat
gaagctgaacatgaaggttatgttatcaagatttttaataatggtatcgtggtattagta
ccgaaatttggtgtcgaaggtttaatcaaattagaacatatgggtgatgtcaactctgct
aattatgatgaagataaatacgaattgacatttaaagatcataatggtaatgaaagaaaa
gttgctgtatttgataaagttaaagttgatgtcaaatctgttaaagacgaaatcagcggt
aagagaaaagcacaacttatgttgaaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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