KEGG   Candida tropicalis: CTRG_04504
Entry
CTRG_04504        CDS       T01115                                 
Name
(RefSeq) conserved hypothetical protein
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ctp  Candida tropicalis
Pathway
ctp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ctp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CTRG_04504
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctp03019]
    CTRG_04504
Messenger RNA biogenesis [BR:ctp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     CTRG_04504
SSDB
Motif
Pfam: DNA_pol_A_exo1 PMC2NT HRDC
Other DBs
NCBI-GeneID: 8299873
NCBI-ProteinID: XP_002550206
UniProt: C5MEL1
Position
Unknown
AA seq 786 aa
MSSSSSDPQDLFKDILPKLTSTIRAANSLAAQDVNFYKAVDHELSEEIDEQGKRLLEISN
DLLRSASSNPSEFNSILYGKDEISSESSWKPISTILDSIFDKIEMTFDQSKRKSPSGDDK
DKQYQYLDEGNTTIKNEKSQRIQKPQLKFKIPVDNSEETPFKPRLTTKPNALVPFKDTMV
NPEPVWEDTVEIIDPPYYAQPYEYEIDNQPYPEKVLTKSEPISPQDWSSTKATWVDTVEA
LNKMIEELKKSEEIAVDLEHHDFRTYYGIVCLMQISNRDQDWIIDTLALRDELTELNEVF
TNPNIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRALGLSRFSLAYLLEHYAQFKTS
KKYQLADWRIRPLSSPMLAYARSDTHFLLYIYDQLKNKLIDSDKLRGVLHDSRQVAKRRF
EYTKFRPLANLFSKQVTCPVMAFNPKEPWGSIVSQYNVPPFKKPLVEVLYKWRDAMARKE
DESVRFIMPNQLLVSLSLLESPVDSIKVLNTPNFVTDAVRINAKEIAQLIERTNKETEVG
DWDQVDQWMKNQTLQQDENLIDNVAQCSEIFDNLIQQNSTVFENPKDLLNESSVAFKNIY
NNGKSLYTLEFTDKKVIKHNINETFASRLEIVWKRLNEEKFVRTVPIDDINEENEQEEVE
EEPSSESRSTTKKSSSSILFDDDRDINPNELITLRKRHVQNSKTTKNSSKQQQEQQQLQA
KQTELDFANADKILLTGSKNRSDKQQKKKRSFDPYGRDNEGPKPAKKAKTMTTGKSSTYK
TKSRRS
NT seq 2361 nt   +upstreamnt  +downstreamnt
atgtcatcatcttcatcagatcctcaggatcttttcaaagacattttacctaaattaaca
agtactataagagcagccaattcattagctgcacaagatgttaatttttataaagctgtt
gatcatgaattaagtgaagagattgatgaacagggtaaaagattgcttgagatatctaat
gatttattaagatcagcatcatctaatccaagtgaatttaattctattttatatgggaaa
gatgaaatcagttctgaatcatcatggaaaccaatttcaacaatacttgattccatattt
gataaaattgaaatgacttttgatcaatctaaaagaaaatcaccttctggagatgataaa
gataaacaatatcaatacttagatgaaggtaatactaccattaaaaatgaaaaatctcaa
agaattcaaaaacctcaactaaaatttaaaatcccagttgataattcagaagaaactcca
tttaaaccaaggttgaccactaaaccaaatgctttggtaccctttaaagatactatggtg
aatccagaaccagtctgggaagacactgttgaaatcatagatcctccatattatgctcaa
ccgtatgaatatgaaatcgataatcaaccatatcctgagaaggtattaactaagtcagaa
cctatatctcctcaagattggtcatctactaaagcaacatgggttgacactgttgaagca
ttaaacaaaatgattgaagaattgaagaaactggaagaaattgcagttgatttggaacat
catgatttcagaacatactatggtattgtttgtttaatgcaaatttctaatcgtgatcaa
gattggattatcgatactttagcattacgtgatgaattaactgaattgaacgaagtgttt
accaatccgaatattgttaaagttttccatggggcttttatggatattatttggttacaa
agagatttggggttgtatattgtttctttatttgatacatatcatgcttctagagcactt
gggttatccagattttcattggcttatttgttagaacattatgctcaatttaaaacttct
aagaaatatcaattagctgattggagaataagaccattatcttcaccaatgttggcatat
gctagatcagatactcatttccttttgtacatttatgatcaacttaaaaacaaattgata
gattctgataagttgcgtggagtattacatgattcacgtcaagttgcaaagagaagattt
gagtacactaaattcagaccattagcaaatttattttccaaacaagttacatgtccagta
atggcattcaatccaaaggaaccatggggttctattgtatctcaatataatgttccacca
ttcaaaaaacctttagttgaagtattatataaatggcgagatgcaatggcacgtaaagaa
gatgaatcggtaagatttattatgccaaatcaacttttagttagtttatcacttttagaa
tcaccagttgacagtattaaagtattaaacacaccaaattttgttactgatgccgttaga
attaatgccaaagaaattgctcaattgattgaacgaacaaataaagaaacagaagttgga
gattgggatcaagtagatcaatggatgaagaaccaaactcttcaacaagatgaaaatctt
attgataatgttgcccaatgtctggaaatttttgacaatttaattcaacagaactcaaca
gtttttgaaaatcctaaagatttattaaatgaaagttcggttgcgttcaaaaatatttac
aataatggtaaatcattatacactttggaattcacagataagaaagtaatcaaacataac
attaatgaaacttttgcttcaagattagaaattgtttggaaaagattaaatgaagaaaaa
ttcgttcgtacagttcctatcgatgatatcaatgaagaaaatgaacaagaagaagttgaa
gaagaaccttcttcagaaagtcgatcaacaaccaaaaaactgtcaagttcaatattattc
gatgatgatagagacattaatccaaatgaacttataacccttcgtaagcgacacgttcaa
aattccaaaactaccaaaaactcatcaaaacaacaacaagagcaacagcaactacaagcc
aaacaaactgaacttgattttgccaatgctgataaaatattgcttactggttctaaaaat
agatctgataaacaacaaaagaagaaacgtagttttgatccatacggtagagataatgaa
ggtccaaaacctgctaagaaagctaagactatgactacaggtaaatcatctacatataaa
acaaaaagcagaagatcctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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