KEGG   Chlamydia trachomatis L2b/UCH-2: L2BUCH2_00319
Entry
L2BUCH2_00319     CDS       T02548                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ctru  Chlamydia trachomatis L2b/UCH-2
Pathway
ctru03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ctru00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    L2BUCH2_00319
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ctru03021]
    L2BUCH2_00319
   03400 DNA repair and recombination proteins [BR:ctru03400]
    L2BUCH2_00319
Enzymes [BR:ctru01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     L2BUCH2_00319
Transcription machinery [BR:ctru03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     L2BUCH2_00319
DNA repair and recombination proteins [BR:ctru03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      L2BUCH2_00319
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: CCP67682
Position
complement(347311..351501)
AA seq 1396 aa
MFREGSRDDAALVKEGLFDKLEIGIASDVTIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECYCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFK
TTPSRIGNVLGMTASDLERVIYYEEYVVIDPGNTDLVKKQLLNDAKYREVVEKWGKDAFV
AKMGGEAVYDLLKSEDLESLLGELKDRLRKTKSQQARMKLAKRLKIVEGFVSSSNRPEWM
VLKNIPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVATPSKDMTLGIYYLMADPTYFPEEHGGKTKAFKDEVEV
LRALNAGGFILKDEICGSRRDETGRGIHIHEKIKVRIDGQIIETTPGRVFFNTIVPKELG
FQNYSMPSKRISELILQCYKKVGLEATVRFLDDLKELGFVQSTKAAISMGLKDVKIPEIK
KEILKDAYDKVAIVKKQYEDGIITDGERHSKTISIWTEVSDLLSNALYSEIKKQTNSKHN
PLFLMVDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGAR
KGLADTALKTADSGYLTRRLVDVAQDVIITERDCGTLNHIEVSTIRQGSEELLPLKDRVY
GRTVSENIYQPGDKSNVLAYAGDVLTSAQAEAIDDAGIESVKIRSTLTCESRRGVCAKCY
GLNLANGHLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGVAATSSTPEIVAECDGILVY
LDLRVVVDQEGNNLVLNKMGALHLVQDEGRSLSEYKKLLSTKSIESLATFPVELGAKILV
NDGAAVTAGQRIAEVELHNIPIICDKPGFVHYEDLVEGVSTEKVANKNTGLVELIVKQHR
GELHPQIAIYADANMKELVGTYAIPSGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGG
LPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLISLTKHLI
VQRGDSVIKGQQLTDGLVVPHEILAICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIV
RQMLQKVRITDPGDTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTE
SFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQYLEKEQ
EDLVFDFDSEFESVAG
NT seq 4191 nt   +upstreamnt  +downstreamnt
atgttcagagaaggttctcgagacgatgcagccctggtaaaagaagggctgtttgataag
ttagaaattgggattgcttcagatgtgactattcgcgacaagtggtcttgtggcgaaatt
aagaaaccggagacgatcaactaccgtacatttaaacctgaaaaaggcggtttattctgc
gaaaagatttttgggcctactaaggactgggaatgttattgcggtaaatataagaagatc
aaacataaaggaattgtatgtgaccgctgtggagtagaggtcacactttctaaagtgcga
cgagaaagaatggctcatattgagttagctgttcctattgttcacatatggttcttcaaa
acaactccttcaagaatcggaaatgttttaggaatgaccgcttcggacttggagcgtgta
atttattacgaagaatatgttgttatcgatccaggtaatactgatctcgtgaagaaacaa
cttctcaatgatgcgaaatatcgagaagttgttgaaaaatggggtaaagatgctttcgtt
gccaaaatgggaggagaggctgtttatgatcttctcaaatctgaagatttggaaagcctt
ttaggagagcttaaagatcgtttaagaaaaacgaaatctcagcaagcgagaatgaagctt
gctaaacgtctgaagatcgtagaaggttttgtatcttcttcgaaccgtcctgaatggatg
gtattgaagaacatccctgttgttcccccagatttacgtcctttagttcctttagatggt
gggcgttttgctacttcagacttaaatgatctgtatcgtagggttattaaccggaataat
cgcttaaaagctattttacggctaaaaactcctgaggtcattgtccgcaatgagaagcgg
atgttgcaggaagctgttgacgctctgtttgacaatggacgtcacggacatcctgttatg
ggagctggcaatagacctctgaagtctttgtcagagatgttgaaagggaaaaacgggcgt
ttccgacaaaatttgttaggtaaacgagtggattactccggacgttcagtgattattgtt
ggtcctgaattgaaatttaatcagtgcggtttgcctaaggaaatggcgctggaattgttt
gagccatttattatcaaacgattgaaagatcagggtagtgtttatactattcgttcagcg
aagaagatgattcagcggggagctcctgaagtttgggatgttcttgaagaaataattaaa
gggcatccagttttactaaaccgagcgcctactttgcaccgattaggaatacaggctttt
gagccagtattgattgaagggaaggctattcgggtccatcctctggtatgtgcagcattc
aacgccgactttgatggagaccaaatggctgttcacgtgccgctctctatcgaggcgcag
ttagaagctaaggtcttgatgatggctccagacaacattttcttgccatcttctgggaaa
cctgttgcaactccttctaaggatatgacattgggtatctattatttaatggctgatcca
acctacttccctgaagaacatggagggaaaacaaaagcatttaaagacgaagtagaagtg
cttcgagctctgaatgctggagggtttattctgaaggatgagatctgtggttctcgtcga
gatgaaactggacgagggattcacatccatgagaaaattaaagttcgaatagatggtcag
attattgaaacaacacctggtcgtgtatttttcaatacgatcgttcctaaagaacttggt
ttccaaaactatagcatgccaagtaagcgtatcagtgaattgattctgcagtgctataag
aaagttgggttagaagctactgtacgcttcctagacgatcttaaagaattaggctttgta
caatctacgaaagctgcgatttctatgggtctgaaggatgttaagattcctgaaatcaag
aaagaaatcttaaaagatgcttacgacaaggttgctattgttaagaaacagtacgaggac
ggaattattactgatggggaacggcattccaaaacgatcagtatttggactgaagtctca
gacctcttgtctaatgctttgtactctgagatcaagaaacaaacaaatagcaaacataat
ccgctattcttgatggttgattctggagctcgaggaaataaatctcagttaaaacagtta
ggtgctttacggggactaatggctaaaccaaacggagccattattgaatctccgattact
tcgaacttccgagaaggtttaactgttctagagtactctatttcttctcacggagctaga
aagggattggcagataccgcgcttaaaacagcggattccgggtatttgactcgtcgttta
gtagacgtcgctcaggatgtcattattactgagagagattgtggtactttaaatcatatc
gaggtgtcgacaatccgtcagggttctgaagaactgttgcctctaaaagatcgtgtttac
ggacgtacggtttccgaaaacatttatcagcctggtgataagagcaacgtcttagcatat
gctggcgatgtattaacttctgctcaagctgaagctattgatgacgctggtattgaaagt
gtgaagattcgttccactcttacttgtgaaagtcgtcgaggagtatgtgctaaatgctac
ggtttgaatctcgctaacggtcatttgattggattaggagaagccgttggtattatcgca
gctcaatccattggggaacctggaactcagttaacaatgagaacgttccaccttgggggg
gttgctgcgacatcctcaactccagagatcgttgctgagtgcgatgggattcttgtttac
ctagacttgcgtgttgtcgtagaccaagagggtaataatcttgtgcttaacaagatggga
gctcttcacttagttcaagacgaaggacgaagcttaagtgaatataagaaactcttgagt
acgaagtctattgaaagtctggcaacattccctgtggaattaggagctaagattttagtt
aatgatggtgctgctgttacagcgggacagagaattgctgaggtagagcttcataacatc
ccaattatctgtgataagccaggattcgttcattacgaagatttggtagagggagtctcc
acagagaaggtcgcgaataagaatactgggcttgttgagttaatcgtaaaacagcacaga
ggggaattacatcctcagatcgctatatatgctgatgccaatatgaaagagttggtcggt
acgtatgctattccttctggagcaattatctccgtagaagaaggtcaacgtatcgctcca
ggaatgctcttagcgagattgcctcgaggggctatcaagactaaagatattactggaggt
ttgccaagggttgccgagttagtagaagctcgtaagcctgaagatgctgctgatatcgct
aagattgatggggttgttgacttcaaaggcattcagaagaacaagcgtattcttgttgtc
cgagatgagattacgggaatggaagaggaacatttgatttctctaaccaaacacttaatc
gtacaacgaggcgatagcgtaatcaaaggtcagcagttgacggatggtttagttgttcca
catgagatccttgcgatttgtggtgttagagagcttcagaaatatttagttaatgaagtt
caagaagtataccgcctacaaggggtagacattaacgacaaacacatcgaaattattgtt
cgtcagatgttgcagaaagttcgcattactgatccaggtgatacgacgttattgtttgga
gaagatgtcgataagaaagagttctatgaagagaaccgtcgcacggaagaagatggaggg
aaacctgctcaagctgttccagtgctgttgggaatcactaaagcttctttgggaactgag
tcctttatttctgctgcttcgttccaagatacgactcgggtcttaacagacgctgcttgc
agcagtaagacagactatctgttaggattcaaagagaatgtgatcatgggacatatgatt
cctggaggtacaggatttgatacgcacaagcgtattaagcaatatcttgaaaaagagcaa
gaagacttggtctttgattttgacagcgagtttgagtctgtggcaggttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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