KEGG   Acetivibrio thermocellus DSM 1313: Clo1313_2004
Entry
Clo1313_2004      CDS       T01933                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
ctx  Acetivibrio thermocellus DSM 1313
Pathway
ctx03420  Nucleotide excision repair
ctx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ctx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Clo1313_2004
   03430 Mismatch repair
    Clo1313_2004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ctx03400]
    Clo1313_2004
Enzymes [BR:ctx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Clo1313_2004
DNA repair and recombination proteins [BR:ctx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Clo1313_2004
   MMR (mismatch excision repair)
    Other MMR factors
     Clo1313_2004
SSDB
Motif
Pfam: UvrD-helicase AAA_19 UvrD_C Viral_helicase1 UvrD_C_2 AAA_11 AAA_30 RINGv EH_Signature
Other DBs
NCBI-ProteinID: ADU75049
Position
complement(2361554..2363293)
AA seq 579 aa
MIINSDTRIPIENHFRVSAGPGAGKTHWLVNHIKNVLQNSTRLSNARKIACITYTNIAVE
TILKRLGTAADQVEVSTIHSFLYRHVVKPYCSFIASDVGLNLEKFNGHNDTIVSNSRIKH
WLENLPCKDQLKKPCECNQLLYSKVHRKALIKWLETLYYSFDNDKLYITGDSKKAYYGKL
HLTNQCLKILESELFQYKKLYWKDGIVDHNDILYFSYKLIEKYPFIIQILRAKFPYFFID
EFQDTNPIQLSLIRKIGQKETIVGVIGDKAQSIYSFQGASMTQFEKFYLPNLIDYVMVDN
RRSTNQIVDVLNLIRKDIQQNKFRKVEGDLPVILVGDRNKGYEKAKELCNNSEICTLTRD
NATANSMKKEIDENISDKNLFLELKILDSNSKRCNVVYSCIQAVELANNGNYKEAIKKLE
YLFTERNDKHAVKKMALSCLCLLINNYNSFKDKTLMDFYSFVKDKIFTDLSKFRKGNIKT
FYEKHTYQQLAAYVNIVDDISYFKTIHKAKGDEFNNVLLILKEKDLDFLLKPNLLKNEEH
RIYYVAISRAKEKLFICVDNLNPQNILKLNTLFNIVILN
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgataataaattctgatactagaataccaattgaaaaccattttagagtttctgcaggt
ccaggcgctggtaaaacacattggcttgtaaatcatataaaaaatgtgttgcaaaattca
acaaggttatctaatgcaaggaaaattgcatgcataacttatactaatatcgcagtagag
acaatactaaaacgtttgggaacagcagctgatcaagttgaagtatcaacaattcatagt
tttttgtatagacatgtagtaaagccatattgttcgtttattgcctctgatgtaggtttg
aatttggaaaagtttaatggtcacaatgatactattgttagtaattctagaataaaacat
tggttagaaaatcttccttgcaaagatcagttaaaaaagccttgtgaatgtaaccagctt
ttatattcgaaagtccataggaaagcactgattaagtggctcgaaacattatattatagc
tttgataatgataagttatacataactggagatagtaaaaaggcatattacgggaaattg
catttgactaatcaatgtttgaaaatactcgaatcagaattatttcaatataagaaatta
tattggaaagacggtatagttgaccataatgatattctatattttagttataagcttata
gaaaaatatccttttataatacaaatactaagagctaaattcccatacttttttattgat
gagtttcaggatacaaatcctatacaactttctttaataagaaaaataggccaaaaggag
actatagtaggggttattggcgataaagcccaatctatatattcatttcaaggtgctagt
atgacacaatttgaaaaattttatcttccaaatttaattgattatgttatggtagacaat
cgtagaagtacaaatcaaattgtcgatgtattgaatttaattcggaaagatattcagcaa
aataaatttcgcaaggtagaaggtgatttgccagttattttagttggtgatagaaataaa
gggtatgaaaaagcaaaagagttatgcaataatagtgaaatctgtactttaactagagac
aatgcaactgcgaatagtatgaaaaaggaaattgatgaaaatatttcagataaaaattta
tttcttgaactaaaaatcctagatagtaattcaaaaaggtgcaatgtagtttattcatgt
atacaagcagttgaattagcaaataatggtaattacaaagaagctataaaaaagctagaa
tatttatttacagaaaggaatgataaacacgcagttaaaaagatggctttgagttgttta
tgtttgttaataaataactataatagttttaaagataaaactttaatggatttttacagc
tttgttaaagataaaatctttacagatttatcaaagtttcggaaaggaaatattaaaact
ttttatgaaaaacatacataccaacagttggccgcatatgtaaatatagtagatgatatt
agttactttaaaactattcataaagcgaaaggtgatgaatttaataatgttttactcata
ttaaaagaaaaagatttagattttttattgaagcctaatcttcttaaaaatgaagaacat
aggatttattatgttgcaattagtagagctaaagagaaactatttatttgtgttgataat
ttaaatccgcaaaatattttaaagttaaatacactctttaatattgttattttaaattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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