KEGG   Chlorella variabilis: CHLNCDRAFT_59028
Entry
CHLNCDRAFT_59028  CDS       T02924                                 
Name
(RefSeq) hypothetical protein
  KO
K13126  polyadenylate-binding protein
Organism
cvr  Chlorella variabilis
Pathway
cvr03015  mRNA surveillance pathway
cvr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cvr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CHLNCDRAFT_59028
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHLNCDRAFT_59028
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvr03019]
    CHLNCDRAFT_59028
   03041 Spliceosome [BR:cvr03041]
    CHLNCDRAFT_59028
Messenger RNA biogenesis [BR:cvr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     CHLNCDRAFT_59028
   mRNA cycle factors
    Stress granule specific factors
     CHLNCDRAFT_59028
Spliceosome [BR:cvr03041]
 Complex C
  Other components
   Complex C specific factors
    CHLNCDRAFT_59028
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded DUF6107
Other DBs
NCBI-GeneID: 17351568
NCBI-ProteinID: XP_005844200
JGI: ChlNC64A_1_59028
UniProt: E1ZQ58
Position
Unknown
AA seq 634 aa
MASPTVATPVEAVAAGTPPAPTAAAPGAGTAAAATHNSSLYVGDLDRDVTEAQLFEVFSQ
IGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERALDQLNYTPLVGRPMRIMWSHRD
PAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDE
SARLAIEKVNGMLLEGKKVYVGPFLRRSERSSDSEVKFTNVFVKNLDEAVSDDEVKAMFA
EHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAER
EAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGK
SRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVALAQRRDVRRAQLEQQYQQRVAMPPG
PRGPMAPGMFPPGGAPPMFYPPGPRGPMGPGMMNPYMMAGPGRGMPGRGPRGMMMPPQMM
GPGGARSGRGGRGGRGGRGEFMGRGRGPASGRGGRGRGEGIPAPPVGAPAAPAAAVTPTE
GGQLTAAMLAAAPAEQQKQLLGERLFPLVANVQPDLAGKITGMLLEMDNSELLLLLEDPT
ALDAKVEEAVSVLKQHNAIPDGAIVREKGGAGQA
NT seq 1905 nt   +upstreamnt  +downstreamnt
atggcttcccccactgtcgctactcccgtcgaggctgtcgctgctggcaccccgcccgcc
cccactgcggctgcccctggcgccggcaccgctgctgctgccacccacaactccagcctg
tatgtcggcgacctggatcgcgatgtcaccgaggcccagttgttcgaggtcttctcgcag
atcggcccggtggcctccattcgcgtttgccgtgatgccgtcacccgccgctccctgggc
tatgcgtacgtgaactacaacagtgtgctggacccggcggctgccgaacgtgcgctggat
cagctcaactacaccccgctggttggccgcccgatgcgcatcatgtggagccaccgcgac
cctgccttccgcaagtcgggggtcggcaacatcttcatcaagaacctggacaggtcggtg
gacaacaaagcgctccacgacaccttctccgcctttggcaacatcctgagctgcaaggtg
gcccaggatctcaagggcgagagcaagggctatgggtttgtgcattttgagaaggatgaa
tcggcacgcctggccattgagaaggtgaatggcatgctgctggagggcaagaaagtttat
gtggggcctttcctgcgccgctctgagcgctccagcgattccgaggtcaagttcacaaat
gtgtttgtgaagaatttggatgaggccgtgagcgatgatgaggtaaaggccatgtttgcg
gagcacggcaccgtcaactcgtgcatcatcatgcgggacgacgagggcaagagcaagggc
tttggctttatcaacttcgaggaacccgagcaggcggcctcagcggtgcaggccctgaat
gggaaggacgtgaattgcaaggagctgtacgtgggtcgcgcccagaagaaggcggagcgt
gaggccatgctgcgtgccaagtttgaggagcttcgatcagagcgcatcgccaagtaccaa
ggcatgaacctgtacgtcaagaacctgcatgatgacattgacgatgagacgctgcgcact
gagttctcccagtttggcaccatcacctccgcaaaggtcatggtggacagtgcgggcaag
agccgtggctttggctttgtgtgctacgccagccccgaggaggccacccgcgccgtgacc
gagatgaacgggcgcatgatcaagggcaagcccatctacgtcgcgctggcgcagcgccgt
gacgtgcgccgtgcccagctggagcagcagtaccagcagcgagtagccatgccgcccggc
ccccgcggccccatggcccctggcatgttcccaccaggtggcgccccgcccatgttctac
ccgcccgggccgcgtggccccatgggtcccggcatgatgaacccatacatgatggccggc
cccggccgcggcatgccggggcgtggcccccgcggcatgatgatgcccccgcagatgatg
ggtcccggtggtgcacgctctgggcgtggcggccgtggtggccgtggcggccgcggcgag
ttcatgggccgtggccgcggccctgccagtgggcgtggtggccgtgggcgcggggagggc
atcccggcaccacctgtcggagcgccagcggcacctgccgctgctgtgacgccgaccgag
ggtggccagctcaccgctgccatgcttgcggcggctccagctgagcaacagaagcagctg
ctgggcgagcgcctgttcccgctggtcgccaacgtgcagcccgacctggccggcaagatt
actggcatgctcctcgagatggacaactcagagctcctgctgctgctggaggatccaact
gcccttgatgccaaggtggaggaggcggtgtcggttctgaagcaacacaacgccatacct
gatggtgctattgtgcgcgagaagggcggagctggccaggcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (287)   
   KEGG ORTHOLOGY (1)   
   RefGene (282)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (302)   

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