KEGG   Synechococcus sp. JA-3-3Ab: CYA_0821
Entry
CYA_0821          CDS       T00318                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
cya  Synechococcus sp. JA-3-3Ab
Pathway
cya03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cya00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CYA_0821
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cya03019]
    CYA_0821
   03009 Ribosome biogenesis [BR:cya03009]
    CYA_0821
Enzymes [BR:cya01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     CYA_0821
Messenger RNA biogenesis [BR:cya03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CYA_0821
Ribosome biogenesis [BR:cya03009]
 Prokaryotic type
  rRNA processing factors
   CYA_0821
SSDB
Motif
Pfam: RNase_E_G
Other DBs
NCBI-ProteinID: ABC99026
CyanoBase: CYA_0821
UniProt: Q2JW46
Position
834601..836736
AA seq 711 aa
MPRQIVIDEQHRVAAVFAEDQVQELIVASGTYQVGDVYVGIVENVLPSIDAAFVNIGSGE
RNGFIHVSDLGPLRLKRNHASISELVLPQQKVLVQVMKEPTGNKGPRLTGDLAFPGRYLV
LRPYGKGVHLSRRIEDREERNRLKSLAILIKPPQMGLLVRTEAEGVSEEAMIEDLEQLKK
LWEDIQQQYQAARGPGLLSRDDDFIQRVLRDVYSEDVNRIVTDSPAGAKRVRSYLQGWNK
GQMPPGVVVDAHREPTPILEYFRVNAVIRQALRPRVDLPSGGYIVIEPTEALTVIDVNSG
SFTQSATSRETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMDSRRDQLLVLEHFNKAL
SSDKARPQVVQLSELGLVELTRKRQGQSLYEIFGHSCPTCEGLGILARLPGAEPGRLLTV
ESGLPVTLPTEGEDGSSPSLLQEGDSQRAGLRLGSNGVSRTEGRVSLSRSRTAPEQRPDL
EESRIEVGRKRSRDEWVDPRVGQRPVSRSGEAEGGSLEVPGEDLLQPAGGGAEQKRKESR
RPSRGEDGEEQGSHRDQPTAGRSARAGGVESSESRPARQAITVEMTPLQQRVYSELGLSP
LLLLDQPPPSGRDTVVMVALPGTVKMASPEEAEAGATSANGTAETVAPEAAALPEQEPVN
TLPPPAPSEPQTPPPVSSMAEPLATVTPQEVVIDPSQQSPAASRRRRSRSS
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgcccaggcagattgtaattgatgagcaacaccgcgtcgctgctgtttttgccgaagac
caagtccaagagctgatcgttgccagtggcacctaccaggtgggagacgtctacgtcggg
atcgtcgagaacgtcctgcccagcatcgacgctgcctttgtcaacattggctccggcgaa
cgcaacgggtttattcacgtcagcgacctaggcccgctacgcctcaagcgcaaccatgcc
tccatctcggagctggttctgccacagcaaaaggtgctggtgcaggttatgaaggagccc
accggcaacaaagggccacgcctcaccggcgatctggcctttccagggcggtacttggtg
ctgcgaccctacggcaaaggggttcatctgtcccgccgcatcgaggatcgggaagaacgc
aatcgcctcaagtcgctggctattttgatcaaacccccccagatgggcctgttggtgcgc
accgaggccgagggggtgtctgaagaggcgatgatcgaagacctggagcaattgaaaaag
ctctgggaggatattcaacagcagtatcaggcggcacggggtccggggctgctcagccga
gatgacgattttatccagcgagtgctgcgggatgtctactcggaggacgtcaaccgcatc
gttaccgactcgccggcaggggcgaagcgggtgcgtagctatttgcaaggttggaacaag
ggccagatgccgcccggtgttgtggtcgatgcccaccgcgaacccacccccatcctggag
tatttccgggtcaatgcagtcatccggcaggcgctgcgaccccgggtggatctcccctcc
ggcggctacatcgtcattgagcccaccgaagccctgacggtgatcgatgtcaactctggc
tctttcacccaatcggccacctctcgcgagacagtgctgtggaccaactgtgaggcggct
accgagattgcccgtcaactgaggctgcgcaacattgccggcgtgatcgtggtggatttc
atcgacatggattcccgccgcgaccagttgctggttttggagcacttcaacaaggccctc
tccagcgacaaagctcgcccccaggtggttcagttgtcggaattggggctggtggagctc
acccgcaagcggcaggggcaaagcctttacgagatcttcggccactcttgtcctacttgt
gaggggctagggatcctggcccgcctgccaggagctgagccaggacggctgttgacggtc
gaaagtggcctgccggtaacgttgcccactgagggggaggacggttccagcccaagcctg
ctccaggagggcgactcgcagcgggcgggcctgcggctggggagcaatggggtgtcgcga
accgaaggccgtgtctccctgagccgctcccgtactgccccagaacagcgaccggatctg
gaggaatcgcgaattgaggtggggcgcaaacgctcccgcgacgagtgggtggatccccgc
gtaggccagcgcccggtttcccggagcggagaggcagaagggggcagtctggaggtgcct
ggggaagatctcttgcagccggcagggggcggggcggagcagaagcgcaaagaatcccgg
cgtcccagccggggagaagatggggaagagcagggctcccacagagaccagcctaccgcg
gggcgatccgctcgcgccggtggggtggagtcctcagaaagccgtccagcccggcaagcc
attactgtggagatgacccccttgcaacagcgggtctactcagagttagggctgtcgccg
ctgttgcttctggatcagccaccgccctcgggccgcgacacggtggttatggtggccctg
ccgggcactgtaaagatggccagcccggaagaggcggaggccggtgcaacttctgccaac
ggcacggcggagacggttgcccctgaagccgcagctttgccggagcaggagccggtaaat
actcttcccccgccagcaccctccgagccgcaaactcctccgcctgtatcatcgatggcg
gagccgctggcaacggtgacgccccaggaggtagtcatcgacccgtctcagcaatctccg
gcggcctccagacgacggcgctcccgcagcagctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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