KEGG   Cycloclasticus sp. P1: Q91_2141
Entry
Q91_2141          CDS       T02265                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cyq  Cycloclasticus sp. P1
Pathway
cyq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cyq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Q91_2141
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cyq03019]
    Q91_2141
   03400 DNA repair and recombination proteins [BR:cyq03400]
    Q91_2141
Enzymes [BR:cyq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Q91_2141
Messenger RNA biogenesis [BR:cyq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Q91_2141
DNA repair and recombination proteins [BR:cyq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Q91_2141
SSDB
Motif
Pfam: RQC DEAD HTH_40 Helicase_C HRDC RecQ_Zn_bind ResIII Sigma70_r4_2
Other DBs
NCBI-ProteinID: AFT68174
UniProt: K0C486
Position
complement(2244345..2246459)
AA seq 704 aa
MNRAQSILQSTFGYDAFREPQGEIIHELEQGRDAFVLMPTGGGKSLCYQIPAVLRDGTAI
VVSPLIALMQDQVDALNQLGIKAAYLNSTLNVAEAREVEAQLLNGALDLLYVAPERLLNP
IMLSLLERCHIALFAIDEAHCVSQWGHDFRPEYQKLRVLHERFPQVPRIALTATADQRTR
DEIIAQLQLEGARVFINSFDRPNIHYAISEGNNPKLRLWRFIQENHAQDAGIVYCLSRKK
VEATAEWLTEQGRIALPYHAGLSQELRQKNQQRFLRDEGVIIVATIAFGMGIDKPDVRFV
AHLSLPKSIEAYYQETGRAGRDGEPANAWMAYGLQDVLTLRQFMQNSKADEAHKRVEHNK
LESMLGLCELIACRRQALLGYFDERLEQPCGACDNCTTPPEKWDGSEAAQKILSSIYRTG
QRFGVNYIIDVLMGKADDRIRQNQHEQLSTFGIGKEFSTMEWRTIFRQLIALGFINVEAE
SHGSLTLTEKCRPVLRGEQKLALRKQTKEEKLATEKKKKSPVRPQDEPLWDALRALRTQL
AEDSGVPPYVIFHDATLMEMIKKRPVEIGDMRYISGVGDQKIKRYGQVFLAEIAKYPLAE
LLNNRLSATVNETLMLYQEGLDIKAIATQRDMKENTVYGHLADAIEAGLLDVKEVLDLDD
SEYQEIIMTIESLEDESKGRIKPIYEALDEEYEYGIIKCVQASM
NT seq 2115 nt   +upstreamnt  +downstreamnt
atgaatcgcgcgcaatctattttacagtcaacgtttggttacgacgcttttcgtgagcca
caaggtgagattattcatgagttagagcaagggcgcgatgcctttgtgctgatgcccact
ggcggcggtaagtcgctgtgctaccaaattccagccgtattgcgtgatggcactgcgatt
gttgtatcgccgttgattgcgctgatgcaggatcaggtggatgcgcttaatcaactgggt
attaaagcagcctatttaaattcaacactcaatgtcgctgaggcgcgagaagtggaggcg
caattattaaatggcgctttagatttattgtatgtggcgccagaaaggttgttgaaccct
attatgctgtcgttgttggagcgctgtcatattgccttgtttgcgattgatgaggcgcat
tgtgtgtcgcaatgggggcatgactttaggccagaatatcaaaagttacgtgtgctgcat
gagcgttttccacaagtgccgcgtattgcattaaccgccacagctgatcaacgtacgcgc
gatgaaattattgcgcaattacaacttgaaggggcgcgggtattcatcaatagttttgat
cggccgaatattcactatgctatttctgaaggtaataacccgaaattacggttgtggcgc
tttatacaagaaaatcatgcgcaagatgcaggcattgtgtattgcctatcacgcaagaaa
gtagaagcgactgccgaatggttaacagaacaagggcgtatcgcattgccttatcacgcg
ggcttatcgcaagagcttaggcaaaaaaaccaacagcgttttttacgcgatgaaggggtg
attattgtcgctacaatcgcctttggtatgggcatagataagccggatgtacgttttgta
gcgcacttaagtttaccaaaaagtattgaggcgtattatcaagaaaccggtcgtgcaggc
cgtgatggcgagcctgcaaatgcctggatggcgtatggcctacaagatgtattgacgctg
cgacaatttatgcaaaactccaaggccgatgaggcgcataagcgtgtcgagcataataaa
ttagaatctatgctggggctttgcgagctgattgcttgtcggcggcaagccttgttaggc
tactttgatgagcggttagaacagccatgtggtgcctgtgataattgcacaacaccgcct
gaaaaatgggatggttctgaagcggcgcaaaagattttatcgagcatttatcgtacaggg
caacgctttggggttaattatattattgatgtcttaatgggcaaggctgatgaccgtatc
cggcaaaaccagcacgagcagttaagtacctttggcattggtaaagaattctcaacgatg
gaatggcgaactatttttaggcagttgatagcgcttggctttattaatgttgaagcagaa
agccatggctcgctaacactgacagaaaaatgccgaccagtgttacgtggtgaacaaaaa
ctggcgctaagaaagcaaacaaaagaagaaaagctggcaacagaaaaaaagaagaaaagc
cctgttcgcccacaagacgagccgttatgggacgctttacgagctttgagaacgcaacta
gcggaagacagtggtgtgccgccctatgtcatttttcatgatgcaaccttaatggaaatg
attaaaaagcgcccggttgagattggcgatatgcggtatatcagtggcgtgggtgatcaa
aaaataaagcgttatggccaggtttttttggcagaaattgcaaagtacccgttagcagaa
ttattgaataatcggcttagcgcaacggttaatgagacgctcatgttgtatcaagagggt
ttagatataaaggcgattgcaacacagcgcgatatgaaagaaaacacggtatatggacat
ttagccgatgcaattgaagcagggctactggatgtcaaagaggtactcgatttagacgac
agtgaatatcaagaaatcatcatgactatagagtctttggaagatgagtcaaaaggccgc
attaaacctatctatgaggccttggatgaagagtatgaatacggcattattaaatgcgtt
caagcctctatgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (35)   

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