KEGG T00813: Dalk

Desulfatibacillum alkenivorans: Dalk_2875

Entry

Dalk_2875 CDS T00813

Definition

RecD/TraA family helicase

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

dal Desulfatibacillum alkenivorans

Pathway

dal03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:dal03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 UvrD_C_2 AAA_19 Viral_helicase1 AAA_11 PIF1 HHH_5 Helicase_RecD DUF2075 AAA_28 PhoH AAA_22 AAA_18 HHH DUF258 AAA_25 HHH_2 AAA_16 AAA_29 AAA_14 AAA T2SE AAA_17 NTPase_1 HHH_3 ArgK NACHT UvrD_C AAA_23

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(3690686..3692878)

AA seq 730 aa
MPEIQGKVQGITFFNERNMYTIARVDTDNGLKTLVGAMGRLAVGETIKARGEWDVHPRFG
EQFKVDAFEILLPSTTEGVRNYLASGMIRGVGPAMADRIIDHFGEKALEILDESPKRLSE
VKGIGKKKLKGIIADWQDKRTQRNVLMFLASFGIGTAYGVRIFQTYGQETGAIIKDNPYK
LAEDVAGIGFSTADGIARKMGIPADSPKRLEAGVLHALSRASNNGHFYLPREELIHEAAS
LLDQNPSDVDNILSGMWQTGKVIFDKITDDPENPLDIVYLTAYYATEVGLARRIQAFLTV
PLNLKKIKAEEALERVHQRFAIRLSEEQLDVLEKIFGSRISVITGGPGTGKTTLVRSVQL
LFSAMGKSVLQVAPTGRAAKRLAEVTSRDASTIHRALAYDFKTGKFFRNEEEPLDADVII
VDEASMVDAFLMYHLIKAIPMNAVLILVGDVSQLPPVGPGNALRDIIESGQVPVFHLTKI
FRQAAQSLIIRNAHRVNAGEDLVTVRDQSKEDPDFYFLSENDQERMVSLVLTMCRERIPN
RFGFDPMTQIQVLTPMHKGPAGTINLNRQLQKILNPGPDLITRGEQCFRAGDKVMQIKNN
YSKEVFNGDIGAITNVSPSSKSVVVEFDAGPVPYTFSEMEELVLAYAISIHKSQGSEYPA
VIMLLSTAHYALLQRNLVYTGITRAKRLMVLVGSQKAVSLAVGNDTPSRRATRLAHRLRQ
TSPSLVDDDE

NT seq 2193 nt +upstreamnt +downstreamnt
atgcctgagatccaaggcaaagtgcagggcatcaccttttttaacgaacgcaacatgtac
accatcgccagggtggacacggacaacggcctgaaaaccctggtgggcgctatggggcgt
ttggccgtgggagagaccatcaaagcccggggcgagtgggacgtccacccccgcttcggc
gagcaattcaaggtggacgcctttgaaatcctccttccctccaccacggagggggtgcgc
aactacctggcctccggcatgatccggggcgtggggccggccatggccgaccgcatcatc
gatcatttcggcgagaaggccctggaaatcctggacgaatccccgaaaaggctttccgaa
gtcaaaggcatcggcaaaaaaaagctcaagggaatcatcgccgactggcaggacaagcgc
actcagcgcaacgttctcatgtttctggccagttttggaataggcacagcctacggggtg
cgcatattccagacctacggccaggaaaccggcgccatcatcaaggacaatccgtacaaa
ctggctgaagacgtggccggcatcggcttttccacggccgacggcatcgcccggaaaatg
ggcatcccggcggattcgcccaaacgcctggaggcgggagttctccacgccctgagccgg
gcttccaacaacggccatttttatttgccccgggaggagttgatacacgaggcggcttcc
ttgctggatcagaacccttcggacgtggacaatatcctcagcggcatgtggcagacgggc
aaggtgattttcgataaaatcacggacgatccggaaaatccactggatatcgtttacctg
accgcctattacgccacggaagtcgggctggcccgccgcatccaggcctttttgaccgtg
cctttgaacctgaaaaaaatcaaggccgaggaagccctggaaagggtgcaccagcgcttt
gccattcgtttgtccgaagagcagttggatgtgctggaaaaaattttcggctcccggatt
tccgtgatcacgggcggtccgggtacgggaaagaccaccctggtccggtcggtgcagctg
ttgttttccgccatggggaaaagcgtgcttcaggtcgctcccacggggcgggcggccaaa
cgcctggcggaggtcacctcgcgggacgcctccaccatccatagggccctggcttacgat
tttaaaacaggcaagttcttccgcaacgaggaagaacccctggacgcagatgtgatcatc
gtggacgaagcctccatggtggacgcctttttgatgtatcacctgatcaaggccatcccc
atgaacgccgtactcattctggtgggcgacgtttcccagcttccccccgtagggccgggc
aatgcattgcgggatatcatcgagtcaggccaggttccggtgtttcatttgaccaagatt
ttcaggcaggccgcccaaagcctgattatccgcaacgcccacagggtcaatgcgggagag
gacctggtcacggttcgcgaccagagcaaggaagacccggatttttatttcctgtccgaa
aacgaccaggaaaggatggtgtccctggtgctgaccatgtgccgggagcgcatccccaac
cggttcgggttcgaccccatgacccagattcaggtgttgacgcccatgcacaaagggcct
gcaggaaccatcaacctcaaccggcagttgcaaaagatcttaaaccccggtccggacctc
attaccagaggggagcaatgcttccgggcgggcgacaaggtcatgcaaatcaagaataat
tactccaaggaggtctttaacggcgacatcggcgccatcaccaatgtaagcccgtcatcc
aaaagcgtggtggtggagtttgacgccggcccggttccctatacgttcagcgaaatggag
gagttggtgctcgcctacgccatttccatccacaagtcccagggatcggaatatccggcg
gtgatcatgctgttgtccacggcccattacgccttgttgcagcgcaatctggtttacacc
ggaataacccgggccaaacgccttatggtgctggtgggcagccaaaaagccgtgtccctg
gccgtgggaaacgacaccccgtcccgccgcgccacccggctggctcacaggctgcgccaa
acctccccgtccctggtggatgatgatgaatag

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-DAL (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (30)   
   Pfam (30)   
All databases (40)   

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