KEGG D.aromatica: Daro

Dechloromonas aromatica: Daro_1942

Entry

Daro_1942 CDS D.aromatica

Definition DNA polymerase III, alpha subunit

Orthology K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]

Pathway dar00230 Purine metabolism
dar00240 Pyrimidine metabolism
dar01100 Metabolic pathways
dar03030 DNA replication
dar03430 Mismatch repair
dar03440 Homologous recombination

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:dar00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:dar00240]
Genetic Information Processing; Replication and Repair; DNA
replication [PATH:dar03030]
Genetic Information Processing; Replication and Repair; Mismatch
repair [PATH:dar03430]
Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:dar03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: DNA_pol3_alpha PHP tRNA_anti

Other DBs NCBI-GI: 71907571
NCBI-GeneID: 3567871
JGI: Daro1942
UniProt: Q47EP3

Position 2090875..2093958

AA seq 1027 aa
MSLPEYAELHCLSNFSFLRGASHPEELAARALAQGYAALALTDECSLAGVVRAHLAAKKH
GLKFIVGSEMMTVDGLKLVFLACNRHGYGNLSALITLARRRAEKGGYTLHRNDLESISPS
GALPDCLVLWVPGNNPSSADGEWLVSRFPGRSWIAVELHAGPEDAERLAGLQSLGEVCGL
PLVATGDVHMHIKARRPVQDVLTALRLKSTVFEAGYALFPNGERHLRSRLRLSRLYPPEL
LAETLNIAARCEFLLDELRYEYPEEIIPSGETPASWLRSETERGLQRRYPAGVPGSVRER
IEHELGLIAEMAYEAYFLTVYDIVCYARSQDILCQGRGSAANSAVCYALGVTEVDPARSA
LLFERFVSKERGEPPDIDVDFEHERREDVIQYIYTKYGRERAALAAALITYRTKGALRDA
GRALGFGIAQINALTASLAWWDKREQLPERFAELGLDPHAPRVEKWLAIAEALRGFPRHL
TQHVGGFVISRGPLSRLVPVENAAMSARSVIQWDKDDLDAMGLMKVDILALGMLSAIRRM
LQIVGETTGRPMKMQDIPAEDPATYEMLCHADSMGVFQVESRAQMAMLPRLRPQNFYDLV
VEVALVRPGPIQGDMVHPYLKRRQGRERIEEISPAVDAVLERTYGVPIFQEQVMQLAVVA
ANFTPGEADQLRRAMAAWKRKGGLEPFEQKLLAGMAANDLPESFARRIIAQIQGFGEYGF
PESHAASFALLVYASAWLKRHHPAAFLCGLLNSQPMGFYSPSMLIQDARRHGVRVLPPDV
MTSDWDSRLDERGAVRLGLREISGFSVAAAKRITAVCRENQPFLNVADLAARAGLQRRDL
DLLAAGDALQGLAGHRRQAAWAATVAVVQGDLFDGTPVVEAEIELPAPSDGENLVADYRS
LGLTLRSHPLSLLRQYLAERRFVTAADLKMAGHHTLIRSVGIVVGRQRPGTATGIVFVTL
EDETGLSNVVVHPQLVEKQRRELLGSTLLGVYGQLQVEGEVVHLVAKRLVDLSAWLGRLE
TVSRDFH

NT seq 3084 nt +upstreamnt +downstreamnt
atgtcactgcccgagtacgcagaactccactgtctttccaacttcagcttcctacgcggt
gcctcgcatccggaagagctggcggcacgtgcgctagcgcaaggctatgctgccctggcg
ctgactgatgaatgctccctggccggtgttgttcgggcgcatctggcggccaagaagcat
ggcctgaaattcatcgtcggtagcgagatgatgaccgtcgatggcctgaagctggttttt
ctggcctgcaatcgccatggttacggcaatctctcggcgctaatcacgctggctcggcgg
cgcgcggagaaggggggctacaccctgcaccgcaatgatctggagtccatatcgccgagt
ggtgcgctacctgactgtctggtgctctgggtgccgggcaataatccatcatccgcggat
ggcgagtggctggtgagtcgctttcctggtcggagttggattgcagtcgaattgcatgcc
gggccggaggatgcggagaggctggctggcttgcagtccttgggtgaggtctgcggcctg
ccattggtcgcgaccggcgatgtccatatgcacatcaaggcccgtcggccggtgcaggat
gtgctgacggccttgcgtctgaaaagtacggttttcgaggctggctacgcgctattcccc
aacggcgagcgtcatttgcgctcccggctccggctgtctcgactctatccgccagaactt
ctggctgaaaccttgaacatcgcggcacgctgtgagtttttactcgatgaactgcgctat
gaatacccggaagaaatcattccatcgggtgaaacaccggccagctggctgcgcagcgaa
accgagcgcggcctgcaacggcgttacccggccggtgttcctggcagtgttcgcgagcgg
attgaacacgaactgggcctgattgccgaaatggcctatgaggcctatttcctgacggtt
tacgacatcgtctgctacgcccgtagccaggatattctttgtcagggccgtggttcggcc
gccaattcggccgtctgctacgcgctgggcgtgactgaagtcgatccagcgcgttcggcc
ttgctgttcgagcgcttcgtttcgaaagaacgcggcgaaccgccggatatcgatgtcgat
ttcgagcacgaacggcgcgaggatgtcatccagtacatctacaccaagtacggtcgtgag
cgggcggcactggccgcagcgttgatcacctaccggaccaagggcgccctgcgcgatgct
ggccgggcgctgggtttcggcattgcccagatcaacgcgctgaccgcttcgctggcctgg
tgggacaagcgcgagcagttgccggaacgcttcgccgagcttggtctcgatccgcatgcg
ccgcgtgtcgagaaatggctggccatcgccgaggctctgcgtggatttccccgtcacctg
acgcagcatgtcggcggcttcgtcatctcgcgcgggccgctgtcccggctggtgccggtt
gaaaatgcggcgatgtcggcgcgcagtgtgattcagtgggacaaggatgatcttgatgcg
atggggctgatgaaagtcgacatcctggctctcggcatgctgtcggcgatccgccggatg
ctgcagatcgttggcgagacgaccggtcgaccgatgaaaatgcaggatattccggccgaa
gacccggccacctatgaaatgctctgtcacgccgacagcatgggtgttttccaggtcgaa
tcccgtgcccagatggccatgttaccgcgcctcaggccacaaaatttctacgatctggtt
gtcgaagtggcgctggtgcggccggggccgattcagggcgacatggtgcatccctacctg
aagcggcggcagggcagggagcggatcgaggaaatttcgccagccgtcgatgccgtgctc
gaacgcacctatggtgtgccgatctttcaggagcaggtcatgcaactggccgtcgtcgct
gccaacttcacgcccggcgaggccgaccagctacgccgggcaatggcggcctggaagcgc
aagggcggcttggaaccattcgagcagaaactgctggctggcatggccgccaacgatttg
ccggagagcttcgcccgacggatcatcgcccagatccagggcttcggtgaatacggcttt
cccgaatcccatgccgccagttttgccttgctcgtttatgcctcggcctggctcaagcgc
caccacccggccgccttcctgtgcggtctgctcaacagccagccgatgggtttctactcg
ccgtcgatgctgattcaggatgctcgtcgtcatggtgttagggtactgccccccgatgtt
atgaccagcgactgggatagccggcttgacgagcgcggtgccgtgcgtctcggtctgcgc
gagattagtggcttctcggtggccgccgccaaacgcattactgcggtctgccgggaaaat
cagccctttttgaatgtcgccgatctggcagcgagggccgggctgcaacggcgtgatctc
gacctgctggccgctggcgatgccttgcaggggctggccggccatcgtcggcaagccgcc
tgggctgccacggtagctgttgtacagggagacctgtttgacggtacgccggtggtcgaa
gcagaaatcgagctgccagcgccgagtgatggtgaaaatctggttgccgattaccgcagc
cttggcctgacgctacgttcgcatccgctgagcctgttgcgtcagtatctggctgaacgt
cgattcgtgactgcggccgatctaaaaatggcggggcaccataccttgatccgatccgtt
ggcattgtcgtcggccgtcagcgaccgggcaccgcaaccggcattgtctttgtcacgctg
gaagacgaaaccggattgagcaacgtggtcgttcatccgcaactcgtcgaaaaacagcgc
cgcgaactacttggctcaacgctgctcggggtttacggacaattgcaggtcgaaggagag
gtggtgcatctggtcgccaagcgcttggttgatctctccgcctggctggggcggctggaa
acggtcagccgggattttcactga

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JGI-DAR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)

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