KEGG   Candidatus Desulforudis audaxviator: Daud_0562
Entry
Daud_0562         CDS       T00655                                 
Name
(GenBank) DNA polymerase III, epsilon subunit
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
dau  Candidatus Desulforudis audaxviator
Pathway
dau03030  DNA replication
dau03430  Mismatch repair
dau03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Daud_0562
   03430 Mismatch repair
    Daud_0562
   03440 Homologous recombination
    Daud_0562
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dau03032]
    Daud_0562
   03400 DNA repair and recombination proteins [BR:dau03400]
    Daud_0562
Enzymes [BR:dau01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Daud_0562
DNA replication proteins [BR:dau03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Daud_0562
DNA repair and recombination proteins [BR:dau03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Daud_0562
SSDB
Motif
Pfam: Helicase_C_2 RNase_T DEAD ResIII DNA_pol_A_exo1 DEAD_2 RNase_H_2 AAA_30 SecA_DEAD
Other DBs
NCBI-ProteinID: ACA59103
UniProt: B1I276
Position
600494..603259
AA seq 921 aa
MSRTFVVLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLD
DADLAERPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGYRATQAYDTVDLARLVL
PGLPSYRLELLCAHLDLPERPGHRAMEDARAAAGLFTALLERFCRLEFTTQATVHRILSQ
TPGSPWFPLVDAAVRLGIKTLPDHGIQAAGDGDWPAAVPAVGAGVKTVPGFGPQAVEAFL
GPGGVLTRHFADFEYRRPQMQVALAVGRALEEQTVLTVEAGTGTGKSFAYLVPAALWALD
GGRRVVVSTHTVNLQDQLMEKDLPLLGRALDAPLKTVLLKGRGHYLCLRRWGAAVNEQSF
LPDEGFLYARIAVWLARTKTGDRAELSLRPEEKGFWDGVAAGDWGCAHAYCRFNSVCFLQ
RARRAAEQAHLVITNHSLLLSDLKMENRLLPAYDALVLDEAHHLEGVATEQLGTTVSRGA
LERWVEGLNRLTGRIGEFYPDNRDEFLRDGEALLAAVRRFFALLGARLRRRELPEEDFAA
ERLGPRALDACPETAGSYLELAGSLKAYVQRLSRAVERLTDSTVPAVQEELRVGLEQELA
VGKRLASDLEFVYEAADPGYVFWLEGGGRQTAEGVLRAAPVHVGELLHDGFFRSGKPVIL
TSATLTVQSSFSFFDERVGLEHLPRDLRGSLIVGSPFAYAEQALLYVVTDLPDPGDGDGA
YLDAVSDALGRIVGVTRGRTLALFTAHKALRTAYRRLKPVLEKQGLELLGHGLDGGRARL
LQYFRNTPQAVLFGASSFWEGVDVPGDALSCLVIVKLPFEPPNRPVLQARREEVRRRGRS
DFNDLCLPQAVLRLKQGFGRLIRTTADRGVVIILDNRLVRKRYGALFLESLPAAPMHGSL
EAGLEATAAFLFDGTFAASKP
NT seq 2766 nt   +upstreamnt  +downstreamnt
gtgtcccgcacgtttgtggtgctggacttggaaaccaccggcctcgatcctcaagcagac
gagattgttgaggtcggcttggtgcgtgtcgaggacgggaagcccggagcggttttccac
gccctggtgcgcccctcgcgacctttgccggcgcggatcaagagcctgaccggcctggac
gatgccgacctggcggaaaggccggattggtccgaagtgcgcccggcggtgaccgccttc
ctcgggaatgagccggtggtcgggcaccacgtgcattttgacctggccttcctggaaagg
cacgccgggtaccgggcaacgcaggcgtacgacaccgtggacctggcgcggctggtgctg
cccggactgccgtcgtaccgcctggagttgctgtgtgcgcacctggacctgcctgaacgg
ccgggccaccgcgccatggaggacgcccgggcggcggccgggctgttcacggcgctcctg
gaaaggttttgccgcctcgaattcaccacccaggccacggtgcaccgcatcctgtcccag
acccccggttctccctggttcccgctggtggacgcggcggtgcggttggggatcaagacc
cttccggaccacggaatccaggcggcaggcgacggtgattggcccgccgcggttccggcg
gtcggggccggggtcaagaccgtacccgggttcggcccgcaggccgttgaagcgttcctg
gggcccggcggtgtgctgacccgtcacttcgccgactttgaataccggcggccgcaaatg
caggttgcactggcggtgggccgggcgctggaggagcagaccgtcctcacggtggaagcc
ggcaccgggaccggcaagtctttcgcctacctggtgccggccgcgctctgggccctggac
gggggacgccgggtggtggtgtcgacccatacggtcaaccttcaggaccagttgatggaa
aaagacctaccgcttctcggccgggcgctagacgcgccgctcaagaccgtgctcctgaaa
ggccgggggcactatctctgcctgcggcgttggggagcggccgtgaatgaacagagcttt
ttacccgacgagggcttcttgtatgcccgcattgcggtgtggctggcccggacgaaaacc
ggagaccgggccgaactcagcctgcggccggaggaaaagggattctgggacggagtggcc
gcgggagactggggctgcgcgcacgcgtactgccgtttcaacagtgtctgtttcttgcag
cgggcccggcgggccgccgaacaggcgcacctggtgatcaccaaccattcactcctgctt
tccgacctgaagatggaaaaccgactgctgccggcatacgacgccctggtgctggacgaa
gcacaccacctcgagggggtggccaccgagcaactggggaccaccgtatcgcggggcgcg
ctggaacggtgggtggaggggctgaaccggctgaccggaagaatcggcgagttctacccg
gacaaccgggatgagtttctccgggacggggaggcactgctggcggcggtacggcgtttt
ttcgccctgctgggtgcgcgtctgcggcggcgggaacttccggaggaagactttgcggcg
gagcgcctcggtccgcgggccctggacgcgtgcccggaaacggcgggaagttaccttgaa
cttgccgggagtctgaaagcctacgtgcaacggctgtctagggcggtcgagcggctgacc
gacagcaccgtgccggcggttcaggaggaactgcgggtggggctcgagcaggagttggcg
gttggcaagcgcttggccagcgacctggagttcgtatacgaggccgccgatcccgggtat
gttttctggctcgagggcggggggcggcagaccgccgagggcgtgctccgcgcggcgccg
gtccacgtaggggagctcttgcacgacggcttcttccgctccggcaagccggtcattctc
acttcggccacactcaccgtccaaagttcgttctccttttttgacgagcgggtggggctt
gagcatttgccgcgggacctgcggggcagcctgatcgttggttctcctttcgcctatgcc
gaacaggccctgctgtacgtggtgaccgacctgcccgacccgggagacggggacggggcc
tacctggacgccgtcagcgatgccctcgggcggatcgtcggggtcacccggggccggacg
cttgcactatttaccgcacataaagcgttgcgcaccgcatatagaagactgaaacccgtc
ttggaaaagcaaggcttggaactgttgggtcacggcctggacggggggcgggcgcgtctt
ttgcagtatttccgcaacacaccccaggcggtgctgtttggggcctccagtttttgggaa
ggggtggacgttccgggggacgcgctgtcctgcctggtgattgtgaaactcccgtttgaa
ccgcccaaccgccctgtgctccaggcgcggcgcgaggaggtccgccggcggggccggagt
gacttcaacgacctgtgcctaccgcaagccgtgctccgcctgaaacagggttttggacgc
ctgatccgtaccaccgcggaccggggcgtggtgattattttggataaccggctggtacgg
aaaaggtatggcgccctgtttttggagtccctgccggcggcgccgatgcacgggtccctg
gaggcagggctggaagcgacggccgcgtttctttttgacggcacgtttgcggcttcaaag
ccataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (41)   

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