KEGG   Candidatus Desulforudis audaxviator: Daud_1393
Entry
Daud_1393         CDS       T00655                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
dau  Candidatus Desulforudis audaxviator
Pathway
dau03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Daud_1393
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dau03400]
    Daud_1393
Enzymes [BR:dau01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Daud_1393
DNA repair and recombination proteins [BR:dau03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Daud_1393
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 AAA_11 HHH_5 Viral_helicase1 PIF1 Helicase_RecD UvrD-helicase nSTAND3 SLFN-g3_helicase AAA_28 T2SSE AAA_22 DEAD HHH_2 AAA_29 NTPase_1 MeaB PhoH AAA TrwB_AAD_bind ABC_tran AAA_16 AAA_23 ATPase_2 HerA_C Mg_chelatase TsaE MobB AAA_18 ABC_ATPase CbiA ATP_bind_1
Other DBs
NCBI-ProteinID: ACA59902
UniProt: B1I4I2
Position
complement(1475632..1477791)
AA seq 719 aa
MEVIHGYLERITYYNEENHFTVARLQETGKRELTTIVGNLAGITPGESLKLTGKWVQDPR
FGPQFRVERFETVVPATVNGIRKYLGSGLIRGIGPVMAKRIVKVFGLQTLDVIDRSPGRL
TEVDGIGPKRVELITRAWADQKEIRGIMIFLQDHGISAAYAAKIYRQYGNASVEIVRTNP
YRLAADVHGIGFVTADRIARQVGIDPNSVTRAEEGTLYVLNESTSEGHVYLPYETLVSRA
AEMLEVSRDLVVEAVERLAADRRVVREDEAVYLTPFYVAETKLAERLNALRDAGAAVRRV
DTAQVIPWVEKRLGLRLAEKQAEAVSLAVSNKILVITGGPGTGKTTIIRAIISIFQALGA
RVLLAAPTGRAAKRMQEASGHEARTIHRLLEFSPGKGGFQRNQDFPLDADAVIVDEASMI
DTLLMNSLVRAVPLSAALILVGDTNQLPPVGPGNVLRDIIDSGRFGVVTLTEIFRQSRES
RIVVNAHRINRGEFPDLSPLGSGRPSDFYFIQEEDPETAVQTILKLCKVRIPRRFGYHPI
RDIQVLTPMYRGLVGAANLNAELQNLLNPGKDGVVRGHRMFRTGDKVMQVVNNYQKEVFN
GDIGRITAVHLEQQQLKVDFDGRAVSYEFSELDELVLAYAVSVHKAQGSEYPVVIMPVMT
QHYVLLQRNLVYTGVTRGRNLVVLVGTKKALAIAIRNDEPRRRYTRLRERLAYYDLGNG
NT seq 2160 nt   +upstreamnt  +downstreamnt
gtggaagtaatccacggttatctggaacgaattacttattacaacgaagaaaaccacttc
acggtcgcccggctccaggaaaccgggaaaagggaactgaccacgatcgtgggtaacctg
gccgggatcacccccggggagtctctgaaactgaccgggaagtgggtgcaagaccccagg
ttcggaccacagttccgggtcgagagattcgagacggtggttccggccacagtcaacggc
attcggaagtacctgggttccggactgatcaggggcatcggtccggtgatggccaaacga
atcgtcaaggttttcgggttgcagacactggacgtaatcgaccgctctcccggccggctt
accgaggtggacggcatcggcccgaagcgagtggaactcatcaccagggcctgggcggac
cagaaggaaatccggggaatcatgattttcctccaggaccacgggatcagtgccgcctac
gccgccaaaatatacaggcagtacgggaacgcgtcggtcgagattgtcagaacaaatccc
taccgccttgccgccgacgtgcacgggatcggctttgtcaccgccgaccggatcgcgagg
caggtgggtatcgacccgaattccgtcacgcgggccgaggagggaaccctttacgttctg
aacgagagcacttccgaaggtcacgtctacctcccctacgaaacgctcgtgagccgggcg
gcggaaatgctcgaggtcagccgggatctcgtggtcgaggccgtggagcggctggctgcg
gaccggcgcgtagtgcgggaagacgaggcggtgtatcttactcccttttacgtcgccgaa
accaaactcgccgagcgccttaacgccctccgggacgccggagccgccgtgcggcgggtg
gatactgcccaggtgataccctgggtggaaaagagactcgggctccggctggccgaaaag
caagccgaggcggtgtccctggcggtttcgaacaagatcctggtgatcaccggcgggccg
ggtaccggcaaaaccaccatcatcagggcgatcatcagtatttttcaggccctgggggcg
cgggtccttctggctgcccctaccgggcgggcggcgaaacgcatgcaggaggcctcaggg
cacgaggcccggaccatccaccgcctgctggagttcagccccgggaaaggcggttttcag
cgcaatcaggacttccccctggacgccgacgccgtcattgtggacgaggcctccatgatt
gatactctcctgatgaacagcttggtcagggccgtcccgctgtccgccgcccttatcctg
gtcggggacaccaaccaactgcccccggtcggtccgggaaacgtcttgcgggacatcatc
gactcgggccggttcggcgtggtgacactgaccgagatcttccggcagtcccgggaaagc
cggatcgtggtgaacgcccaccgcataaaccggggcgagttccccgatttgagcccgctg
ggctccggccggccgtctgacttctatttcatccaagaggaggatccggaaacggcggtc
cagaccatcctcaagctgtgcaaggtacgcattcccagacgtttcggataccacccgatc
cgggacatccaggtactgacgcccatgtacaggggcctggtcggcgccgcgaacctgaac
gccgagctgcaaaacctgctgaacccgggaaaagacggggtggtccggggccaccggatg
tttcggaccggggacaaggtgatgcaggtggtgaacaactaccagaaggaagtgttcaac
ggggacatcggccggatcacggccgtgcacttggagcaacaacaactgaaggtggacttc
gacggccgcgccgtcagctacgagttttcggagctggacgaactggtcctggcctatgcg
gtgtccgtgcacaaggcccaggggagtgaatacccggtggtgatcatgccggtgatgact
cagcactacgttctcctgcagcggaacctggtttacaccggggtgacccgcggccggaac
ctggtggtgctggtcggcaccaaaaaggcattggccatcgccatccgcaacgacgagccg
cgccggcgctacaccaggttgcgggagaggcttgcatattatgacctgggtaacgggtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (60)   
   KEGG ORTHOLOGY (1)   
   RefGene (57)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (36)   
   Pfam (36)   
All databases (103)   

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