KEGG T01284: Deba

Desulfarculus baarsii: Deba_1853

Entry

Deba_1853 CDS T01284

Definition

helicase, RecD/TraA family

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

dbr Desulfarculus baarsii

Pathway

dbr03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:dbr03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 UvrD_C_2 AAA_19 Viral_helicase1 HHH_5 AAA_11 PIF1 Helicase_RecD AAA_28 HHH AAA_16 AAA_22 ArgK AAA PhoH cobW DUF258 MobB IstB_IS21 NTPase_1 T2SE AAA_18 DUF2075 UPF0079 AAA_17 AAA_33 NACHT TrwB_AAD_bind Cul7 KTI12 AAA_14 AAA_29 ATP_bind_1 AAA_10 ABC_tran SRP54 Zot AAA_25

Other DBs

NCBI-GI:

302343283

NCBI-GeneID:

9494319

UniProt:

E1QI25

Position

complement(2059009..2061171)

AA seq 720 aa
MSEQTNTTMRGRVERITFHNPENAYTVAKVAVAGQPGLMTLVGKMPGVAEGQEVEASGRL
VLHAKFGQQLEVESCHLAQPGDAEGVRRYLASGLVKGVGPVMAGRIVDVLGEGAIEKIVN
DPRSLTAVPGVGAKRAASIAQAVISQGMLREAMILLQGHGVGPGTVMRIHRRFGDQTLAV
AQNEPHRLAAEVRGIGFATADQIARRLGMAADHPSRVAAGLLYSLRQAGDEGHVFLPYDE
LMPQAAGLLGLPQAALGPAFARLHQERRIVVEEAFGPRAVYLAGMLALEQSAAQSVARLS
RGRGLLAPERVAKAVEWAGRSLHFEPSTGQAEALRALLAAPLAVLTGGPGTGKTTLVRAL
INIAQRMGQNVALAAPTGRAARRLAEASGRPAQTLHRLLEFSPKENSFLRGADRPLEGQL
IIVDEASMIDIWLGAHLLAATADGACLVLVGDADQLPPVGPGLFFRQIIDSGAARVGRLT
EIFRQGRASLIVENAHRILGGRMPTLPAPGQEADFYFLEEPDPERAAELVRDLVAKRLPN
KYGFDPIDDIQTLAPMHKGAMGCHNLNRLLRQALNPAGQGPGPGVGDKVMQSRNNYELEV
FNGDMGQVLRADDEGLAVSIDGRVVTYSLAEAAELNLAYAVTVHKSQGSEYPAVVLALGN
EHFVLLNRPLLYTAVTRGKKLVVVVGSATALRRAVEHAQPIMRHSLLGRRIKALLGTDND

NT seq 2163 nt +upstreamnt +downstreamnt
gtgagcgagcaaacaaacacgaccatgcgcggccgggtggagcgcatcaccttccacaac
ccggaaaacgcctacaccgtggccaaggtggccgtggccggccagccggggctgatgacg
ctggtgggcaagatgcccggcgtggccgagggccaggaagtggaggccagcggacggctg
gtgctgcacgccaagttcggccagcaattggaggtggagtcgtgtcacttggcccagccc
ggcgacgccgagggcgtgcggcgctatctggcctcgggcctggtcaagggcgtggggccg
gtgatggccgggcgcatcgtcgatgtgctgggcgagggcgccatcgaaaagatcgtcaac
gacccgcgcagcctgaccgccgtgccgggcgtcggggccaagcgcgccgccagcatcgcc
caggccgtgatcagccaaggcatgctgcgcgaggccatgatcctcttgcagggccacggc
gtggggccgggcacggtgatgcgcatccatcgtcgctttggcgaccagaccctggccgtg
gcgcaaaacgaaccccatcgcctggccgccgaggtgcggggcattggtttcgccaccgcc
gaccagatcgcccgccgcctgggcatggccgccgaccacccctcgcgggtggccgccggg
ctgctctacagcctgcgccaggccggggacgaaggccacgtttttttgccatacgacgaa
ctcatgccccaggccgccggcctgttgggcctgccccaggccgccctgggcccggccttc
gcccgactgcatcaagagcgccgcatcgtcgtcgaggaagcctttggcccacgggcggtc
tatctggccggcatgttggccttggagcaaagcgcggcccaaagcgtggcccggctgagc
cgggggcgggggctgcttgcgcccgagcgggtggccaaggccgtggagtgggccgggcgt
agcctgcatttcgagccgtcgacgggccaggccgaggccctgcgggcgctgttggccgcg
cctctggccgtgctgaccggcgggccgggcacgggcaagaccaccctggtgcgggcgctg
atcaacatcgcccagcgcatgggccaaaacgtggccctggccgcgcccaccgggcgagcg
gcccgacgcctggccgaggccagcggtcgcccggcccagaccctgcaccggctcttggag
ttcagccccaaggaaaacagctttttgcgcggggccgatcggccattggaaggccagttg
atcatcgtcgacgaggccagcatgatcgacatctggctgggagcccatctgctggcggcc
acggccgacggggcctgtttggtcctggtgggcgacgccgaccaactgccgccggtgggg
ccggggctgttttttcggcagatcatcgacagcggcgcggccagggtagggcggctgacg
gaaatattccgccagggccgggccagcctgatcgtcgaaaacgcccaccgcatcctgggc
ggtcggatgcccactttgcccgcgccaggccaggaggctgatttctatttcttggaagag
cccgaccccgaacgggcggccgaactcgtccgcgacctggtggccaagcgcctgcccaac
aagtatggtttcgaccccattgacgacatccagaccttggcccccatgcacaagggggcc
atgggctgccacaacctcaaccgcctgctgcgtcaggccctcaaccctgccggccagggg
ccggggccgggcgtgggcgacaaggtgatgcagtcgcgcaacaactacgagttggaggtt
ttcaacggcgacatgggtcaggtgctgcgagccgacgacgaaggactggcggtgtccatc
gacggacgggttgtgacttacagcctggccgaagcggccgagttgaacctggcctacgcg
gtgacggtgcataaatcccagggcagcgaatatccggcggtggtgttggccctgggcaac
gagcatttcgtgctgctgaacaggccgctgctgtacacggcggtgaccaggggcaaaaaa
ctggtggtggtggttggttcggccacggcgctgcgtcgggcggtggagcacgcccagccg
atcatgcgtcacagcctgctggggcggcggatcaaggcgctgttgggaacggacaatgac
tga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (39)   
   Pfam (39)   
All databases (48)   

Download RDF

DBGET integrated database retrieval system