KEGG   Dendrobium catenatum: 110115419
Entry
110115419         CDS       T05027                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X2
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
dct  Dendrobium catenatum
Pathway
dct03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dct00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110115419
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dct03019]
    110115419
Enzymes [BR:dct01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110115419
Messenger RNA biogenesis [BR:dct03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     110115419
SSDB
Motif
Pfam: OB_NTP_bind R3H Helicase_C DEAD HA2_C HA2_N nSTAND3 AAA_19 ATPase Rad17 Ank_5 ResIII Ank_2 ABC_tran AAA_7 T2SSE AAA_22 TsaE AAA_11 AAA_14 AAA_23 Sigma54_activat PhoH
Other DBs
NCBI-GeneID: 110115419
NCBI-ProteinID: XP_020704293
Position
Unknown
AA seq 1216 aa
MTGKRFKKARGKQPENQAFLNESSRVRVGKILEDFRESDGEVYAFEPDLSKQERAAIHEM
CRKMGMISRSSGNGAKRHLSVYKSKKKNQINNKEGELVTSLRFSEEAKAIMQDLFICYPP
DSGELSEKNLQNCSKAVYGAHWKQDTCFLRPSMCKDEIKKKMELHSLRMKDSKFRKVAED
RAKLPIATYMKAITSTLQAHQVVLISGETGCGKTTQVPQFILDHMWSKAESCKVVCTQPR
RISAISVAERISYERGETIGDTVGYKIRFESKGGKNSSIMFCTNGILLRLLIGRGANTSE
MANKKISGRDTLLEITHIIVDEIHERERFCDIMLAIIRDLLPAYPHLRLILMSATFDAER
FSKYFSGCPVIQVPGFTYPVTTYFLEDVLSILRSSDENHLATAALSGVEEVVPLTEEYKT
ALDESIHLALYNDELEPLLEIINAQQNPQTYCYQHSLTGVSPLMVLSGKGRIGDVCMMLS
FGADCSLTDNDGRSAIDWAQQENQFQIYEIIKRHIEKDTSKSAEEEDLLNKYLASINPEN
IDTILIERLLKRICTDSSEGAILVFLPGWADINQTRERLLASGLFKNSSKFMILSLHSMI
PIVEQKKVFKHPPKGVRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYSNVSTFHA
SWISKASAKQREGRAGRCQPGTCYHLYSKVRAAALPDFQVPEIKRMPIEELCLQVKLLDP
NCRVIEFLQKTLDPPVFETIRNAIIVLKDIGALTEDEQLTELGEKLGALPVHPSTSKMLL
FAILMNCLDPALTLACATDYREPFILPMVPDEKKKAAAAKVELASLYGGYSDQLAIVAAF
ECWKNAKNGSQESQFCSKYFVSSSTMNMLLNMRKQLQNELMKAGFIPEDMSSCSLNAQDP
GVLRAVLMAGTYPMVGRFLTPRKNNRRVIVETISGSKVLLHPHSSNFKLSFEKSAVSPII
VYDEITRGDGGLFIKNCSVVSPYPLLLLAVEIAVAPPHDNDDDSEEDSEASSGEEDEMDV
NMSSEQRENQLMSSPDNAVTIVVDRWLKFLSTALDVAQIYCLRERLAEAVLFKVKKPRAV
LPPALGASMHAIACILSYHGHPHILAVDESIDPHEPTLEPSDMSRYNQGRKVSVVTPSSY
LKSLMSDNGRQTFKNFHKFHGPALPTSASASSASNTPLPRIRHNKPSAKAPGHGNPSNPK
KSSFKRRRGSMGSHGG
NT seq 3651 nt   +upstreamnt  +downstreamnt
atgacaggtaaaaggttcaagaaagcgagaggcaagcagcctgagaatcaggcctttctt
aacgaatcctcgcgagttcgagttgggaaaatcctcgaagacttccgcgaatccgatgga
gaagtatacgcatttgaacctgatttatcaaaacaagaacgagcagcaattcacgaaatg
tgcagaaaaatggggatgatatcgagaagctctgggaatggtgccaaacgccatctttca
gtgtacaaaagcaaaaagaagaaccagattaataacaaggaaggagagctggttacctct
ctgcgcttttctgaagaggcaaaagctattatgcaagatctatttatatgctacccccct
gattctggagaattaagtgaaaaaaatttacaaaactgtagcaaagcagtttatggtgca
cattggaagcaagatacttgctttttgaggccttcaatgtgcaaggatgaaattaaaaag
aagatggagcttcattcattaagaatgaaagactcaaaatttagaaaggttgcagaagat
agagctaaacttccgattgcaacctatatgaaggctatcacatcaactttacaagctcac
caggtggtactgatatctggtgagactggttgcggtaaaactactcaggtaccccagttt
attttggatcacatgtggagtaaagctgagtcatgtaaagttgtgtgcacccaaccaaga
cggatctcagcaatttcagttgctgagaggatctcatatgaaaggggagaaactattgga
gacactgttggttataagatacggttcgagtccaaaggtgggaaaaattcttcaataatg
ttctgcacaaatggcattcttttgagattactaatcggcagaggtgcaaatacatcggaa
atggcaaacaagaagatatcagggagggatactcttcttgagataacccacataatagtg
gatgagattcatgagcgtgagaggttttgtgatataatgcttgcaattatcagggatttg
ctgcctgcatatcctcatctacgcttgattctcatgagtgccacatttgatgctgagcgg
ttttcgaaatacttcagtggctgtcctgtcattcaggttccaggattcacataccctgtg
acgacttattttttggaggatgtgctatctattttaagatcatcagatgagaatcaccta
gctactgctgccttaagtggcgtggaggaggttgttccattgacagaagagtacaagacc
gcccttgatgagtcaattcatttggctttatataatgatgaattggaacctttactggag
ataattaatgcccagcaaaacccccaaacttactgttaccaacactcattgacgggagtg
tcaccattgatggtgctttctggcaaaggtagaattggtgatgtttgtatgatgctttcc
tttggtgctgactgctctttgactgataatgatggaaggtcagccatcgattgggctcag
caagaaaatcagttccagatctatgaaatcattaaaagacacattgagaaagatacgtcc
aagtcagctgaagaggaggacctactgaacaagtacctagcaagcatcaatcctgaaaat
attgatactattctaatagagcgtttgttaaaaaggatatgtacagattctagtgaaggg
gctatcttagtctttcttcccggatgggctgatatcaatcaaactagagagaggctactt
gcttcagggctttttaaaaattcctcaaagtttatgatactttctctccattccatgatt
ccaattgtggagcaaaagaaggttttcaagcatcctcctaagggcgtccgtaaaattatt
ctttccacaaatattgctgagactgctataacaattgatgatgttgtttatgttattgat
tctggtcgaatgaaagagaaaagctatgatccttacagcaatgtttctacgttccatgca
tcatggatttcaaaagctagtgctaaacagcgagaggggcgtgctgggcgttgccagcca
ggaacttgttatcatctctattctaaagtccgcgctgctgctttgccagatttccaagtt
ccagaaattaaacgaatgccaattgaagaattgtgtttgcaggttaaacttcttgatcca
aattgtagagtaattgagttccttcagaaaactttggaccctcctgtctttgagactata
cgaaatgcaatcattgtccttaaagatattggagccttgactgaagatgaacagctgaca
gaacttggggaaaaacttggtgctcttccagttcatccatcaacaagcaagatgcttttg
tttgctatcttgatgaattgcctcgatccagctctaactctagcctgtgcaaccgactac
agagagccgtttattcttccaatggtcccggatgagaagaaaaaagcagctgcagctaaa
gttgagctggcttctttgtatggtggttacagtgatcaacttgctattgtagcagccttt
gagtgttggaagaatgcaaagaatggcagtcaagagtcacagttttgctctaagtatttt
gtttcatcaagtaccatgaatatgttactgaacatgcgaaagcagcttcagaatgaactt
atgaaggccggttttattcccgaggatatgtccagctgtagcttaaatgcccaagaccca
ggtgtcttgagggcggtgctcatggctggaacttatcccatggtgggaaggtttctcact
ccgcgaaaaaataacagaagagtaatcgtggagactattagtggttccaaagttttattg
catcctcattcctccaacttcaaattgtcatttgaaaaatctgcggtcagtccaattatt
gtttatgatgagataactcgtggggatgggggtttattcataaagaactgttctgttgtt
tctccttatccgttattattgcttgccgtggagattgctgttgctcctccacatgataat
gatgatgacagtgaggaggattcggaagcatcaagtggagaggaagatgagatggatgtg
aacatgtcatcggagcagcgtgaaaaccaactcatgtcatctcctgataatgctgtcaca
attgttgttgatagatggctaaaatttctatcaacggcccttgatgtcgcccagatttat
tgcttgcgtgagagattagcagaagctgtgctgtttaaagtgaagaaaccacgggcagtt
ctacctcctgcacttggagcatccatgcatgctattgcttgcatcctctcatatcatggg
caccctcacatattggctgtggatgaatccattgatccccatgaaccaacgttggaaccc
tctgacatgagcagatacaatcagggaagaaaggtgagtgtggtcactcccagtagctac
ttgaagtcattgatgtcagataatggcaggcaaaccttcaaaaactttcacaagttccat
ggaccagctctgccaacttctgcttctgcttcctccgcatcgaatactcctttacccagg
attcggcacaataaaccttctgctaaagctccaggtcatggcaatccttcaaatcccaaa
aaaagttcatttaaacgtcgccgaggaagtatgggaagccatggaggttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (23)   
   Pfam (23)   
All databases (63)   

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