KEGG   Oleidesulfovibrio alaskensis: Dde_0152
Entry
Dde_0152          CDS       T00294                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
dde  Oleidesulfovibrio alaskensis
Pathway
dde03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dde00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dde_0152
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dde03019]
    Dde_0152
   03009 Ribosome biogenesis [BR:dde03009]
    Dde_0152
Messenger RNA biogenesis [BR:dde03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Dde_0152
Ribosome biogenesis [BR:dde03009]
 Prokaryotic type
  rRNA helicases
   Dde_0152
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1
Other DBs
NCBI-ProteinID: ABB36953
UniProt: Q317E3
Position
139068..140654
AA seq 528 aa
MVEKLLFADLPLSKEVLRAIQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKTAAFG
IPILERIDPRDKATQAVVLCPTRELAIQVAEEVTTLARHKRGISVVPVYGGQPIERQVRA
LRRGAQVIVGTPGRVMDHLDRGTMDINTVKMVVLDEADEMLDMGFRDDIEFILGKMEQEV
QTVFFSATMPRAILDMAQRYLKEPEFLKVTQKLLTVPSIEQIYFEVRPFQKLESLCRVLD
VYNPKLTIVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDILVA
TDVAARGIDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGREFYKLRDIK
RFTKAQIAQRQVPSLSEVENAKFTQMLNEVTNQIRTGGLERYIELVEGIIGEEFTSVEAA
AALLRMMMHRNAGDAVTEEQKFGDTGAQPGMVRLFFNVGRKARVTARDFVGAIAGETGLP
GRMIGSIDIYDRFTFVEVPNEFAAEVLAVMNGNQIRGNKLAVEPASRR
NT seq 1587 nt   +upstreamnt  +downstreamnt
atggttgaaaaacttcttttcgcagatcttcccctttctaaggaagtgctgcgcgcgata
caggacatgggctttgaggaggcgtctcccatccagacgatgtccatcccgcacatactg
gcgggtaaggatgtggtcggacaggcccagacaggcacgggcaagactgctgcgttcggc
attcccattctcgagcgcattgacccccgtgataaagccacgcaggccgtggtgctgtgt
cctacgcgtgaactggccattcaggtggccgaagaagtgactacactggcccgccacaag
cggggcatcagtgttgttcccgtatacggcggacagcccatcgaacggcaggtccgcgct
ctgcgccgtggtgcgcaggttatcgtgggtacgccgggccgcgtgatggaccacctcgac
agaggaaccatggacatcaataccgtgaaaatggttgtgctggacgaggcggacgaaatg
ctcgatatgggcttccgcgatgacattgaattcattctgggcaagatggagcaggaagta
cagaccgtgttcttttccgccaccatgccccgcgccattctggatatggcgcagcgctac
ctcaaggaaccggagttcctgaaagtcacccagaagctgcttaccgtgcccagcatcgag
cagatatacttcgaggtgcgtcctttccagaagctggaaagtctgtgccgtgtgctggac
gtgtataatcccaagctgaccatcgtgttctgctccaccaaggtgggcgtggacgaactg
gcaaccaatctgcaggcccgcggatatgatgccgacggactgcacggcaacctgaatcag
gcccagcgcgacagggtgatgaaccgcttccgcaaaggaaacattgatattctggtggcc
accgacgtggctgcccgcggtattgatgtggaaaacgtggaagccgtggtcaactacgac
atacccaacgatgtggaaagctatgtgcaccgtatcggccgtacgggccgtgcgggccgt
gcgggccgtgcattcacctttgtgtccggccgcgaattctacaagctgcgcgacatcaag
cgctttaccaaggcgcagatagcacagcgtcaggtaccctcgctttccgaagtggaaaac
gccaaattcacccagatgctcaatgaagtgaccaaccagatacgcaccggcggtctggag
cgctacatagaactggtggaaggcattatcggcgaagagttcacctctgtggaagctgcc
gccgccctgctgcgcatgatgatgcaccgtaacgcaggcgatgccgtgaccgaagagcag
aagttcggtgataccggtgcccagccgggcatggtacgcctgttctttaacgtgggccgc
aaagcccgcgtgacggcacgtgactttgtgggggccattgccggagaaaccggcctgccc
ggacggatgatcggctccatagatatctatgaccggttcacgtttgtggaagtgcccaac
gagtttgccgcagaagtgcttgcagtgatgaacggcaaccagatacgcggcaacaagctt
gccgtggaacctgccagccgccgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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