KEGG   Deferribacter desulfuricans: DEFDS_0146
Entry
DEFDS_0146        CDS       T01188                                 
Name
(GenBank) small nuclear ribonucleoprotein
  KO
K03666  host factor-I protein
Organism
ddf  Deferribacter desulfuricans
Pathway
ddf02024  Quorum sensing
ddf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ddf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DEFDS_0146
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DEFDS_0146
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ddf03019]
    DEFDS_0146
   03036 Chromosome and associated proteins [BR:ddf03036]
    DEFDS_0146
Messenger RNA biogenesis [BR:ddf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DEFDS_0146
Chromosome and associated proteins [BR:ddf03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DEFDS_0146
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: BAI79658
UniProt: D3PAN5
Position
complement(152329..152829)
AA seq 166 aa
MLYAQIEFVYLHNAKIKDAPLLFIMRNKERFRGKIYDFDPYSVIIDDAEVKIHIYKRDIA
TIASAKTIIDVDYISKTYYQTHRGRHPKHTRPPMQDIFLNEVRKSKSPIIAYLTNGVKVR
GLLVGFDDYVLLTSYEDRQQLIYKSAISTVYPLYQDKEIIKYDDER
NT seq 501 nt   +upstreamnt  +downstreamnt
atgttatatgcccaaatagagtttgtttatttacacaatgcaaagataaaagatgcacca
ttactttttataatgaggaataaagagagatttaggggaaaaatttacgactttgatccc
tattcagttatcattgacgatgcagaagttaaaattcatatttacaaaagggatattgca
acaattgcttctgcaaaaactattatcgatgtagactatattagtaaaacctattatcaa
actcatagagggagacacccaaaacatacaagacctccaatgcaggatatatttttaaat
gaggttagaaaatccaaatccccaattatagcatatttaaccaacggagtaaaagttaga
gggttgcttgtaggttttgatgactatgttttgcttacatcctatgaagacagacaacaa
cttatttacaaaagtgcaatatcaacagtttacccattatatcaagacaaagaaatcatt
aaatatgatgatgagaggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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