KEGG D.discoideum: DDB

Dictyostelium discoideum (cellular slime mold): DDB_0216278

Entry

DDB_0216278 CDS D.discoideum

Gene name rpa2

Definition RNA polymerase I, second largest subunit

Orthology K03002 DNA-directed RNA polymerase I subunit A2 [EC:2.7.7.6]

Pathway ddi00230 Purine metabolism
ddi00240 Pyrimidine metabolism
ddi01100 Metabolic pathways
ddi03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:ddi00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:ddi00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:ddi03020]

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7
RNA_pol_Rpa2_4 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 66800165
NCBI-GeneID: 3385677
DictyBase: DDB0216278
UniProt: Q54BM1

Position 6

AA seq 1130 aa
MSEELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIV
EKEIKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGR
LPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRK
AWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLLLKAL
KDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFRARTQFPP
SFSNIKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDSPAFQEVLL
AGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALKKVLDKNFKIADRFSYFL
ATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKTTAIRKLMPESW
GFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQKAQTLLPSFLAAHGMLPIDMVSV
YQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGNEPSIPKTMEISYAPPTNVENGQ
YSGISLFTTGARFMRPVVNLTSGQNELIGPQEQLYMEIAVVPHEVIKGVTTHIETSPTAM
FSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKN
QFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLS
RFEQKKTFFGRPNTVVDELDKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGK
EEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEI
NMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAFQFDENNTAID
FFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNA
LTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLTIY
SKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAAVNITMKLQVS

NT seq 3393 nt +upstreamnt +downstreamnt
atgagtgaagaattaaaatcattaatccaaccacacattgattcatttgatttttttaca
gatcatggtatagatttagtattaaaagatagtgaaccattatattttgaacataatagt
actcaatataaaatcagatttacagatttgaaactttcaagaccaacacgtaatattgtt
gaaaaagagattaaattatatccaaatgaatcaagagaaaccggtacaacttataatgca
ccatttaaaggtgcaattggtttatatgaagttaatgaaatggatgagatggatgacggt
acagaggtagattataataaacaagagccaactcatacatttgaggttgatttaggtcgt
ttaccaattatggtgaagtcaagatattgtcacctcaatggcatgtcaccagagaaatta
attgaaagtagagaagaggaattggagcaaggtggttatttcattgtcaatggtaatgaa
aaggttgtacgtatgttggtcatgacaaaagcaaatcatccagttgcacttcacagaaaa
gcatggacaaacagaggtccaggttacactaaaaatggtattaccattcgttgtgttcgt
ccagatcgttcatcaattacaaacaatcttcattatatcaatgatggtcaaactacatta
cgtttcttatatcgtcgtcaagaattctttttacctgctactctcctcttaaaagcatta
aaagataccactgaaaaggaaatctatgaaaatatcgttcaaggtgataatgaaaatact
tttctcactgatcgtgttgaattatcacttcgtgaacaaaaaattaataatattaacact
caagaagaagttttagattatattggttcacgttttagagctcgtactcaattcccacct
tcattttcaaatattaaaattggtagatggtttattaatcaatttgtttttgttcattta
ccaaattataatgataaatataatttattaattttaatgattcaaaaattatatgcaatg
gttggtggtaaatgtggtacagataatattgattcaccagcattccaagaagttttatta
gctggtcatatttatggtatgattttaaaagagaaattaacagaatatttagaatctaca
aaatcatttgttttaaagagttttgaagataaaaagaaatctggtgataaattgccagat
gcacttaaaaaagtattagataaaaactttaaaatagctgatagatttagttatttctta
gcaactggtaatcttagatcaagttctggtattgatttacaacaaacatcaggtttttgt
gttattgcagataaattaaactttttaagatttatttcacattttagatcaattcataga
ggtgcattttttgcaacaatgaaaactacagcaattagaaagttgatgccagaaagttgg
ggctttttctgtccagtacatacaccagatggtgcaccatgtggtttattgaatcattta
tcatcaaattgtttggttacagttgatgcagcacaagatccaactgttcaaaaggcacaa
acattattaccatcatttttagcagcacatggtatgttaccaattgatatggttagtgtt
tatcaacatcaatatctcactattacattggatggtcgtgtattgggtaagattgaacca
aaagcaggtgaagagatggttaaaatgttacgttatcttcgttcaatgggtaatgaacca
tcaattccaaaaaccatggaaatttcatatgcaccaccaaccaacgttgaaaatggtcaa
tattcaggcatttcattgtttacaactggtgcacgtttcatgagaccagtagtcaatttg
acaagtggtcaaaatgaattgattggaccacaagaacaactatatatggagattgctgtt
gtaccacatgaagttatcaaaggtgttacaactcatattgaaacttcaccaactgctatg
ttttcattgttggcaaatcttacaccattctctgactacaatcaatcaccacgtaatatg
tatcaatgtcaaatggcaaaacaaactatgggtaccccattacattcctatccattccgt
accgataataaattatacaaggttcaaaatgtacaaaaaccaatcgtacacactaaaaat
caattcaaattccgttgtaatgattatccacacggttgtaatgctgttattgccgtaatt
tcaaatactggttacgatatggaagatgctatgattattaataaatccgcttatgaacgt
ggttttggtcatggttccgtttacaagaatgaatacatcgatttggatcaaggtttatca
cgttttgaacaaaagaaaacattttttggtcgtccaaatacagttgtagatgaattggat
aaatttattgataccgatggtcttccattcgttggtcgtttaattaaacctggtgaacca
tattatacctatattcgtccatccgatggtagacaagtcaccaaagattacaaaggtaaa
gaagaagcttatattgaagatgttcgtatcattttcggtccaaatggtgcaactcgtgat
ccatctaaaatcaataacatttgtgttaaattacgtttcaatcgtaatcctgtcattggt
gataaattttcctctcgtcatggtcaaaaaggtgttctttcccaattatggccagaaatt
aatatgccattcactgaaagtggtatgaaaccagatgtaattatcaatccaaatgctttc
ccatcacgtatgaccattggtatgttggtagagattttagccggtaaagctggtgcaatc
catggtaaattccaagatgccaccgctttccaattcgatgaaaacaatacagccatcgat
ttctttggtgaacaattggcaaaggcaggtttcaatcgttttggtaatgaacaaatgtat
agtggtaccactggtaaagaatttgaatgtgaaatctttttcggtgtttgttactatcaa
agattacgtcatatggttaaagataaatatcaagtacgtgctctcggtaaagttaatgct
ttaactcgtcaaccaattaaaggtcgtaaggttggtggtggtattcgtttcggtgagatg
gaacgtgattcccttttggctcatggtgctagtttctgtttgaatgatcgtctcatgaaa
tcctctgatttcgcaaagattaaagtttgtaaattatgtggtagtaccctcacaatctac
tctaaaaaagattattccaatcaaactgtttctgaatgtaaatcttgtaaatccagtgat
tcaatcgctacaatttcaattccttacgttttcacttatttagttgctgaacttgctgct
gttaatattactatgaaattacaagttagttaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   DICTYBASE-DDI (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (7)   
   PROSITE (1)   
All databases (20)

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