KEGG   Desulfitobacterium dichloroeliminans: Desdi_2176
Entry
Desdi_2176        CDS       T02390                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
ddl  Desulfitobacterium dichloroeliminans
Pathway
ddl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ddl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Desdi_2176
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ddl03019]
    Desdi_2176
   03009 Ribosome biogenesis [BR:ddl03009]
    Desdi_2176
Enzymes [BR:ddl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Desdi_2176
Messenger RNA biogenesis [BR:ddl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Desdi_2176
Ribosome biogenesis [BR:ddl03009]
 Prokaryotic type
  rRNA helicases
   Desdi_2176
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19
Other DBs
NCBI-ProteinID: AGA69617
UniProt: L0F8U6
Position
complement(2216910..2218505)
AA seq 531 aa
MSAERLQAFGEINLSKQVLQALSEMGFEEPSPIQKEAIPVAMDGVDLIGQAQTGTGKTAA
FGIPICEKVNPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIR
ALRFGSQVVVGTPGRVLDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILRQVPPE
ERQMMLFSATMPIEIKKLAQNYMHQPKSVAVSRDELTVPLIEQVFYETREKIKVDALCRI
IDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELL
VATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRL
IERLIKTRIVRKELPTLADVSERQAENLKNQLVKIIQRSHLGTYRSIVGSLLEEYDSVDV
AAAALKYAVEGANERSEEEEADIAFGNTGAAPGMVRLFMNIGRLQQVRPQDIVRWIADES
GIPGNIIGMINIYDKFTFVEVPEQHASRVLSCMHQNMIKGRKVNVEPAKAR
NT seq 1596 nt   +upstreamnt  +downstreamnt
ttgagtgcagaacgtttacaagcctttggtgaaattaatttaagcaaacaagttttacag
gcattatcagaaatggggttcgaggaaccctcgccaattcagaaggaagctattcctgta
gctatggatggggtggatttgattgggcaggcgcaaaccggcacaggaaaaaccgcagcc
tttggcattcccatttgtgaaaaggtcaatccaaagtttcaggcagtccaagccctgatt
ttgaccccaacccgcgaacttgcggttcaggtatcagaggaaatcagtaagattggtaaa
taccgccatatcaaaccactaccgatttatggaggtcagtccatcgaccgacaaattcgg
gcccttcgctttggcagtcaagtcgtggtcggaacaccaggtcgggtgcttgatcacctt
aatcgaggaactttaaaacttcaatatgtcaagatggtcgtcttggatgaagctgatgaa
atgttggatatgggctttgtggaagatatcgaaaccatccttaggcaagtccctcccgaa
gaacgtcaaatgatgctgttttcagcaaccatgccgatagaaatcaagaagctggctcaa
aactatatgcatcagcctaagtcggttgcggtaagtcgtgatgagcttacagtgcctttg
attgaacaggtgttttatgaaactagagaaaaaatcaaggttgatgctctttgtcggatt
atcgatatggaagatatcggtcaagccatcattttttgccgaaccaagcgcggtgtcgat
gagcttgtagctgccttagaggccagagggtattttgcggatgctttacatggagattta
agccaacaacaaagagatcgcgtgatgaaaaaattccgtgatggaaaagtggaactcctt
gtagctactgacgtagcagccagaggactcgacatcgataatgtgacccatgtcattaac
ttcgatatccctcaagatccggaatcttatgtgcatcgtatcggccgtacaggaagagca
gggagaaagggtcaggcgattacgctggtttcctcaagggaatatcgacaactccgcttg
attgaacgtttaatcaagacgcggattgtgcgtaaagaattaccgaccttagccgatgtc
agtgaacgacaagcagaaaacctcaagaatcaattggttaagattatacaacggagccat
ctcggaacctatcgatctattgtgggttccttgctggaagaatatgattctgtagatgtg
gctgctgcagccttgaaatatgctgtagaaggtgctaatgaacgaagcgaagaggaagaa
gcggatattgcatttggcaatacgggagcagctcctggcatggttcgcctctttatgaac
atcggccgcctccaacaagttcgccctcaggacattgtgcgctggatagccgatgaaagc
ggaattcccggcaatattatcgggatgatcaacatctatgataaatttacttttgtggaa
gtaccggaacagcatgccagccgcgtccttagttgcatgcatcaaaacatgatcaaaggc
cgtaaggtaaacgtcgagccagcaaaagccagataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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