KEGG   Dickeya dianthicola: DDI_3823
Entry
DDI_3823          CDS       T05141                                 
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
ddq  Dickeya dianthicola
Pathway
ddq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ddq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DDI_3823
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ddq03021]
    DDI_3823
   03400 DNA repair and recombination proteins [BR:ddq03400]
    DDI_3823
Enzymes [BR:ddq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DDI_3823
Transcription machinery [BR:ddq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DDI_3823
DNA repair and recombination proteins [BR:ddq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DDI_3823
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD RNA_pol_L_2
Other DBs
NCBI-ProteinID: ATO34991
Position
complement(3947127..3948116)
AA seq 329 aa
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASINMRIKVQRGRGYVPASARIHTEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq 990 nt   +upstreamnt  +downstreamnt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtcagt
tcgacgcacgccaaggtgacccttgagccgttagagcggggcttcggccatactcttggt
aacgcactgcgccgtattctgctttcatccatgcctggttgcgcggtgaccgaggttgag
attgatggtgtactgcacgagtacagcaccaaagaaggcgtacaggaagatatcctggaa
atcctgctcaacctgaaagggctggcggtgagagttcaaggcaaagatgaagttattctt
accctgaataaatctggcattggccctgtgactgcagccgacatcacccacgacggtgat
gtcgaaatcgtcaagccacagcatgtgatctgccacctgaccgatgagaacgcatctatc
aatatgcgtatcaaagttcagcgtggtcgtggttatgtgccggcgtctgcccgtattcat
acggaagaagatgagcgcccgatcggtcgcctgttagtcgatgcttgctacagccctgtt
gagcgtatcgcttacaatgttgaagctgctcgtgttgaacagcgtaccgacctggacaag
ctggttatcgagatggaaaccaatggtacgatcgatcctgaagaggcgatccgccgtgcg
gcgaccattctggctgaacaattggaagctttcgttgacttacgtgatgtacgtcagccg
gaagtgaaagaagagaaaccagaattcgatccgatcctgctgcgccctgttgacgatctt
gaattgactgtccgctctgctaactgccttaaggcagaagctatccactacatcggtgat
ctggtacagcgtaccgaggttgaactgcttaaaacgcctaacctgggtaaaaaatctctt
actgagattaaagacgtgctggcttctcgtggtttgtctctgggcatgcgcctggaaaac
tggccgccggcaagcattgctgatgagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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