KEGG   Deinococcus deserti: Deide_06510
Entry
Deide_06510       CDS       T00880                                 
Name
(GenBank) putative ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
ddr  Deinococcus deserti
Pathway
ddr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ddr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Deide_06510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ddr03019]
    Deide_06510
   03400 DNA repair and recombination proteins [BR:ddr03400]
    Deide_06510
Enzymes [BR:ddr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Deide_06510
Messenger RNA biogenesis [BR:ddr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Deide_06510
DNA repair and recombination proteins [BR:ddr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Deide_06510
SSDB
Motif
Pfam: DEAD Helicase_C RNase_T Helicase_C_2 ResIII DEAD_2 RecQ_Zn_bind
Other DBs
NCBI-ProteinID: ACO45500
UniProt: C1D0X6
Position
780509..785560
AA seq 1683 aa
MPTKLVTSYVILDTETTSVDRAEARLLEVAAVRVEDGRICDTLQLLVSGERIPREVAELT
GIRQEELDRDGQPLPDVLKQVLAFMGDLPVVGHNAQGFDVPLLKRLCREQSLKFQVPFVF
DTLLLAPLAFAAVVPPVEGYGLEGLHARFCGDVHDDAHRTLADCAATSRLLAYMVERLRA
LPEDQKALISALPVPELALAFQPRSITKAELERLSSRAAGALTEVSAVWSEGRLPQQVSD
MLPSPRPGQLKMAESVSATLSGPGRLVVEAPTGTGKTRAYLYPALLRGEPGKPVVISTHT
KQLQNQIVKEAQHLKDAGFKVRVVALKGQSNYICPERLQLLLTRRFRPDEVPEADQYEAN
EKDLSAGVETASDVAEDQRPGRLIMLPGQARAVALLTLHAQAGEYGALPPSALTRSPEYL
QAKIVTSTVAKRCRDACPFSTCCSYHRTQALVPQADVVVVNHALLLRNQLGGLEQENLPF
DRVVVDEAHDLQDAAESALRQEIGSDAILSVAREFLRRTHGESAGLLPSIEKAARVAQDA
NLATLSQKAATAFDVLVARVDTWQAALQAFAMQFGQGSEAFGFQAAVDPLPMQSAEWRAV
TRASEELTSSLKYCAGFIPSLAQRSSYQMDLEALLARLNDQIDTLGVLLARSLPGAHVYA
VTANGDSASIWAVPLWLSSVLEELWKKTSSLVFTSATLRVPGTWDAKGSGDVADFGVFER
DLALPESSYMVLPPVLPYDKGYVLLTSHLPLVHHPDFSGLVGQEIDNLVTQTPNQALHIF
TANERLRRASRHIKKRHLNSVRDGTQRTVQDLHGDGEWHALGSAGFLQGVDIRDLTLVSL
DKTPFPIPDLVLEAQRRDVNDFETYWNTLYLPRAVLKFVQGFGRLVRNDREGLPAGAFVV
WDKRLAFAHYQDRFLGALPIPAGNVRRARNREDFYAQLGHLWQKPLTFDELVAPKMQAIK
RYREELKGLKDPERQRKLEEALVDLFEFPPGGFREGQYSGIAAALDGIDVLSVMPTGAGK
SLVFQLPAFLGEGYTVVVSPLVALIQDQVSRLQQLGLPAAGLWGGLSRAEQDSTLEDVRC
GRVKLLYLAPERIRKGAAVRKLLQGQPPERVVFDEAHTLLEWGHDFRPDYLHVRQELQNL
GVKAAVSAFTATANPETRRKLIQVLGMDGPERIELGVRRHNLYYEVVDVQTRIGGRKRRN
KAASVEDKPEGNARNVSRDEVLLTMLAGLKTNEDTRDGRAIVYVGSRAKAERLTAMIGEI
GVEVAAYHAGLSPAVRTELLDQFQARFIRVMVATNAFGMGVDAPDIHLVVHYDAPLSLES
YVQEAGRAGRDPNIQARAVLLWSNGSERRAKYLIDHGYPDKEGAQTLLNVMKNGPAFPTL
SELGQCDGVDVNVLPTLLHLLEVSGALRYSYVPGLCRVYPYYGVDLPDDPAVRDLVERTR
KEPVHLSRLYRDRAAAIEDRLIELQREGKLGVMLLEPALRIDLRQDRIGLTSYEERVLNL
KRAKHERFREFTRFLLDRQTCRGMHLQLHFEHRGDRCGNCDVCAPERPAPWEGIDVDFAS
LWNLRKELLRLLTHLEKQEHFVGRSTLVRILRNEEVKGFQGGQDGQAGNAPTAKPFHWKE
KSAPNFGKLRFIKAQDIRSDLEALCGDGLAQVEQRSFRSGGQPLPVVILTDRGRQVAKSW
SVS
NT seq 5052 nt   +upstreamnt  +downstreamnt
atgcccacaaagctcgtgacgtcatacgtgattctcgatacggaaaccacctcagtagac
cgcgcggaagctcgcctgcttgaggtggcggctgtacgtgtcgaggacggccgcatctgc
gacacgctgcaattgctggtctccggtgagcgtattccccgtgaagtcgcggagctgacg
ggcatccgacaggaggaactggaccgtgatggtcagcctctcccggacgtcctgaagcag
gtacttgccttcatgggtgatttaccggtcgtggggcacaacgcgcaggggttcgatgtt
ccgctgctaaagcgcttgtgccgggagcagagcctgaagttccaggtgccgttcgtgttc
gacaccctgcttctcgccccgctggccttcgctgccgtggtccctcccgtagagggctac
ggcctagaaggactccacgcccgcttctgcggtgacgtacatgacgatgcgcaccggaca
ctagcggactgcgctgcgacgtcacggctccttgcctacatggtcgaacgcttacgggcc
cttccagaagaccagaaggccctcatctcggcgcttcccgtccctgaactggccctggcg
tttcagccccgatctattacgaaggccgaattggaaaggctctcttcacgcgctgcaggc
gccttaacagaggtcagcgctgtgtggagtgaaggccgacttcctcagcaggtgagtgac
atgctgccctcgccgcggcccggtcagctgaagatggccgaaagcgtgtcggcaacgctc
agcgggccgggccgcttggtggtcgaagctcccaccggtactggaaaaacccgcgcttac
ctttatccggcgctgctgcgcggcgaacctgggaagcctgtggtgatcagcacccacacc
aagcaactacagaatcagatcgtcaaggaggcgcagcacctcaaggatgcagggtttaag
gttcgtgtcgtggccctgaaagggcagagcaattacatctgtccagaacggttgcaactc
ctgctcacgcgccggtttcgccctgacgaagtgccggaggcagatcagtacgaagcgaat
gagaaggacttgtcagcaggcgttgaaactgccagtgacgtagccgaggaccagcgcccc
ggccggctgatcatgctcccggggcaggcgcgggccgtggcccttttgaccttgcacgcg
caggctggagagtacggcgcgttaccgccaagcgctttgacccgctctccggagtatctg
caagccaagatcgttacgtcgaccgttgccaaacgctgccgggatgcttgcccgttctcc
acatgctgctcgtatcaccgcacgcaagcactggtgccgcaggccgacgtggtcgtcgtg
aaccacgctttgttgctgcgcaaccaactgggtggcctcgagcaggagaatctgccgttc
gaccgtgtggtggttgacgaagctcacgatctgcaggacgcagcagaatccgcccttcgc
caggagattggcagtgacgcgatcctgagcgtcgctcgggagtttctccgccgcacccat
ggggaaagcgccgggttgctgccgagcattgagaaggccgcgcgagttgcccaagacgcg
aatctagccacgctttcgcagaaggccgccacagccttcgacgtgttggtcgcgcgggtc
gacacctggcaggcagccctgcaagccttcgccatgcagtttggtcagggcagcgaggcc
ttcggatttcaggcagccgttgaccccctgccaatgcagagtgccgagtggcgcgctgtg
actcgcgcttcagaggaactgaccagtagcctcaagtactgcgctggcttcattccttca
ctagcgcagcgttcgagctatcagatggacctggaggcgctccttgcccgtctcaatgac
cagatcgatacgctaggggtcttgctcgcaaggtcactgcctggagcgcatgtgtacgct
gttacggcgaatggggacagcgcctcgatctgggccgtcccattgtggctttcctccgta
ctagaggaactgtggaaaaaaaccagcagcctggtctttacgagcgcaacgttgcgcgtg
cccgggacatgggacgctaagggaagcggtgatgttgccgacttcggtgtgttcgagcgg
gatctggcgttgccggagtcaagttacatggtgctgccgcccgtcttgccgtacgacaag
ggatacgttctgctcacgagccacctgccgctggtgcaccacccggacttctccggcctc
gtcgggcaagagatcgacaacctggtcacgcagacgccaaaccaggcattgcatattttc
acggccaatgaacggctgcgccgcgcgagtcgacacatcaaaaagcggcacctcaattct
gtgcgtgatgggacgcagcgcactgtgcaggacctccacggcgatggagaatggcacgct
cttggctcagccgggttcctgcagggcgtcgacatccgggacctgaccctcgtcagcctc
gacaagacgccctttcccatcccggacctcgtgctggaagcgcagcgaagggacgtgaac
gatttcgagacgtactggaacacgttgtacctgccaagggccgtattgaagttcgtgcag
gggtttgggcgtctggtccgcaacgatcgtgaaggcctcccggcgggtgcttttgtcgtc
tgggataagcgcctcgccttcgctcactatcaggaccgcttccttggggcactgccgatc
ccggccgggaatgtccggcgagcgcgtaaccgggaggacttttacgcgcaacttgggcac
ttgtggcagaagcccttgacctttgacgagctcgtcgcgccgaaaatgcaggcgattaag
cgctaccgcgaggagctgaagggtctcaaagatccggagcggcaacgcaaactcgaggaa
gcccttgtggacctctttgaattcccaccgggcggtttccgtgagggccagtactcgggc
attgccgcggcactcgacggcattgacgtgctttccgtgatgccgaccggcgccgggaaa
agcctggtgtttcagctgcctgcgtttcttggtgaagggtatacggtggttgtttccccc
ctcgtggcgttgatccaagatcaggtgagccgcctgcagcaactcggtcttcccgcggcg
ggcctctggggagggctgtcacgcgcagagcaggacagcacactggaggacgtgcgctgc
ggccgggtcaagctcctgtacctcgcgccagagcgcattcgcaagggggctgctgtgcgc
aaactcctccaggggcaaccgccggaacgcgtggtgttcgatgaagcgcacacgctcctg
gaatggggccatgacttccgcccagattacttacacgtacgtcaggaattacagaacctc
ggtgtgaaagcggctgtcagtgcctttactgccaccgcaaacccggagacacgccggaaa
ctgattcaagtccttggcatggacgggcctgaacgcattgagctcggcgtaaggcggcac
aacctgtattacgaggtggtagacgtccagacccgcattggtgggcgcaagaggcgtaat
aaagcagcgtctgttgaagacaagcctgagggcaacgcgcgaaatgtcagtcgggacgag
gtgctgctcacgatgctcgcgggcctcaaaaccaacgaggatacccgcgacgggcgggcc
atcgtctacgttggcagccgtgcaaaagctgagcgcctcacggccatgatcggtgaaatc
ggcgtggaggttgcggcttaccacgctggcctttccccggccgtgcggacggaattgctc
gaccagttccaggcccggttcatccgtgtgatggtcgccacaaatgccttcgggatgggc
gtagacgccccagacatccatctcgtggtccattacgacgcccctctttctttagaaagt
tacgttcaagaggctgggcgtgccggtcgcgatccgaacattcaggcacgagctgtcctg
ctctggagtaatggcagcgagcggcgggcgaagtacctcattgatcacggatacccggat
aaagagggggcgcagaccctgctcaacgtcatgaagaacggtccggccttcccgaccctc
tcagagcttgggcagtgtgacggcgttgacgtcaatgtgctgccgacgctgctgcacctg
ctggaagtcagtggggccctgcggtacagctatgtgccaggcttgtgccgcgtgtatccg
tattacggcgtggacttgccggacgacccggccgtccgggatctcgtggagcgcacccga
aaagaacctgtgcacctctcccgtctgtaccgagatcgggcagcagccatcgaggaccgg
ctgatcgagttgcagcgggaaggcaagctcggcgtgatgctcctcgaacccgcgctgcgc
atcgacctgcggcaggaccggatcggcctgaccagctacgaagagcgggtgctgaacctc
aagcgggctaagcacgagcggttccgcgaattcacgcggttcctcctcgaccgccagacc
tgccgtggcatgcacctgcagctgcattttgaacaccgcggggatcgctgcggcaactgt
gatgtctgcgctcccgaaagacccgccccttgggaaggcattgacgtggacttcgcaagc
ctctggaatctacgcaaggaactgctgcgactcctcactcacctggaaaaacaggagcat
ttcgttggaagaagcacgctggtacgaattctgcgcaacgaagaagtcaaagggttccag
gggggccaggacggccaagccggaaacgcccccacggctaaaccattccactggaaggag
aaaagcgcaccgaacttcgggaaattgcggtttatcaaggcacaggacatccgcagtgat
ctcgaagcgctctgcggtgacggtctagctcaggtggaacagcgcagcttccggtccggc
ggccagccccttccggtggtcatcctcacagaccgcgggcgacaggtggctaagtcgtgg
agcgtgtcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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