KEGG T02278: DHBDCA

Dehalobacter sp. DCA: DHBDCA_p2552

Entry

DHBDCA_p2552      CDS       T02278

Name

(GenBank) MiaB family protein, possibly involved in tRNA or rRNA modification

K18707

threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]

Organism

ded Dehalobacter sp. DCA

Brite

KEGG Orthology (KO) [BR:ded00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ded03016]
    DHBDCA_p2552
Enzymes [BR:ded01000]
2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.5  tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
     DHBDCA_p2552
Transfer RNA biogenesis [BR:ded03016]
Prokaryotic type
  tRNA modification factors
   Methylthiotransferases
    DHBDCA_p2552

SSDB

Motif

Pfam:

Radical_SAM UPF0004

Other DBs

NCBI-ProteinID:

AFV03579

Position

complement(2592325..2593776)

AA seq 483 aa
MDVVLLRGKEAKRMNKEDKQMITENMKNAEGLKVSFLTLGCKVNQTESEALSQLLAGEGY
KTVQEADSADMIIINTCTVTGKGSMKSRKLIRKMVKDHPGAIIAVMGCYAQLSPDEVAGI
DGVGLIMGTQDRSSLLQFLRDIQDERAAGASAKKPAEPLRPLRKVKSFEESVKYEELPLI
KSESRTRAMLKIQDGCSQFCTYCIVPYTRGPSRSRDPENVYREARELLKAGYKEIVLTGI
HIGAFGRDFTDKNMNLGLLVSELVKLPGMKRLRLGSIEPMEFSLELLEVIAANAAVCPHF
HIPLQSGSNKILGKMNRPYTIEDYAALLKQIRARVPDAAIASDIMVGFPGETDQDYQDGL
RFIESCEFSGIHVFPYSRRPGTPAADMPEQIPNRIKTARVRELIQIGQKSRRKYERKFIG
KQLEVLLENVDQDGRARGHTRNYLELRIPSSLAESDLITYAVREEDLVSVPGNAASREIN
EAE

NT seq 1452 nt +upstreamnt +downstreamnt
atggatgttgtattgttaagaggaaaagaagccaagcgtatgaataaagaagataagcag
atgataaccgaaaacatgaaaaacgcagaaggcttgaaggtaagttttctgacgcttggc
tgcaaggtcaaccagactgaaagcgaagcactttctcagctgctggccggtgaaggttat
aagaccgtccaggaggctgattctgccgacatgatcattattaatacctgcaccgtaacc
ggtaaagggagcatgaaatcccgcaagctcatccgtaagatggtcaaggatcatccgggg
gcgatcatcgctgtcatgggctgctatgcccagctaagtcctgatgaggttgcagggatc
gatggagttggtctgatcatgggaactcaggaccggagttccctgcttcagtttttacgc
gatattcaggatgaacgtgctgccggtgcttcagcaaagaagccggccgaacctttaaga
cctctccgcaaggtcaaaagttttgaggaaagcgtgaaatatgaggagcttccgctgatc
aaaagtgagagccggacacgggccatgctgaagattcaggatggctgcagccagttttgt
acatactgcatcgtaccctataccagggggccgtcacgtagccgtgatcctgaaaatgtc
taccgggaggccagggaacttttgaaggcaggatacaaggaaattgtactgaccggtatt
catatcggcgcctttggcagggactttaccgataagaatatgaatctgggacttctggtc
agtgagctggtgaaacttccggggatgaagagactccggcttggttcgattgaaccgatg
gagttttcactggaattactggaggttattgctgccaatgcagcagtatgcccccatttc
catattccgcttcagagcggttccaacaagatcctgggaaaaatgaacagaccttatacg
atagaggattatgctgctttgctgaagcagataagggccagagttccagacgcggcaatc
gcctccgatattatggtcggctttcccggagaaacagatcaggattatcaggacggcctg
cgttttattgagagctgcgaattttccggtattcatgttttcccttattcccggaggccc
ggtacgcccgcggcggatatgccggagcagatacccaaccgtatcaaaacagccagggtc
agggaactgattcagatcggtcaaaagagccgaagaaaatacgagagaaaatttattgga
aaacagcttgaagtacttttggagaatgtggatcaagacggaagagcccgcggacatacc
cgaaattatctggaacttcgaattccgtccagcctggctgagagcgatctcatcacttat
gctgtccgtgaggaggatctggtttctgtcccaggaaacgctgctagcagagaaatcaat
gaagctgaataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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