KEGG T01182: DehalGT

Dehalococcoides sp. GT: DehalGT_0541

Entry

DehalGT_0541 CDS T01182

Definition

DNA-directed RNA polymerase subunit beta'

Orthology

K03046

DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]

Organism

deg Dehalococcoides sp. GT

Pathway

deg00230	Purine metabolism
deg00240	Pyrimidine metabolism
deg01100	Metabolic pathways
deg03020	RNA polymerase

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:deg00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:deg00240]
Genetic Information Processing; Transcription; RNA polymerase [PATH:deg03020]

SSDB

Motif

Pfam:

RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Apocytochr_F_C IncA

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

505299..509186

AA seq 1295 aa
MNEVNDFDAIRISLASPDQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPIKDFEC
ACGKYKRIRYKGIICDKCGVEIARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLNL
STRSLERIIYYSHFIITAVNDEARAKAIKDLEVISSQRVADKGSEVDTRVAQMEAEDATV
EAINQIRRDFSTEREQMEEDIQLLIDQLKDLQKGNLLTENQYYELKQRFSNVFEASMGAE
ALLKLLSYIDMDKERSKLIQETRSTSGQRRKKAGKQLQLVEAFRRSSNKPEWMIMTVLPV
LPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRNEKRMLQEAVD
SLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKLS
QCGLPRRMALELFKPFVMHRLVRDGLAPNIKSARRLVERARPEVYDILEEVVKDRPVLLN
RAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEARETM
LSIHNMMLPSSGEPVVSPSLDMVFGCYYLTTTRPGAKGEGKIFGDFEEAKRYYEMGIIDL
RAIIKVRDGKGNMLETTTGRIIFNDVLPRAVEFQNMDIPKSAIKKIIGRCYKILSSQDMA
IMLDKIKELGFKFATSSGISIAMSDISVPREKTKLVAAADERTAIAEGQFARGLITEDER
YNSIIETWMETTDRITDAIQAGFDKQGSVYMMANSGAKGNISQIRQMAGLRGLMTNPSGR
IIDFPIKSSLREGLTALEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVIILQED
CGTANGTWIIEPKEKGMLPPLVDRILGRWTAHNVVHPQTGEIIVDNNEEIDEIKAKAIGE
AGITEVFVRSPLTCESTHGMCRRCYGRDLGRVRLVDMNTAVGIIAAQSIGEPGTQLTLRT
FHTGGVVGVDITTGLPRVEELFEARPPKVQSIISEIDGVVEVIENENGRHIRIASDEVYQ
DEYELPSGWKTQVQSRQWVDSGMVLASPELEGKSKAVVQSDQNVVARVAGEVTIEGNLIT
IKYSESEEREYTIPAAMQIKVKTGDTIRAGQQLTDGSINPQDILSILGRDAVQKYLVEEV
QKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDLVPGELVDKFRYEDINAKVLAEGG
EPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGRVDKLSGLKENVIIGKLI
PAQCKSCKEATIERAERIAAAASAPAMSGLPENCL

NT seq 3888 nt +upstreamnt +downstreamnt
atgaacgaagttaacgattttgatgctatacggatttcactggcttcccctgaccagata
agaagctggtcttatggtgaggttaccaaacctgaaaccataaactaccgtactttgaaa
ccggagcgggatggtttattctgtgagcgcatttttggccctatcaaggactttgagtgt
gcctgcggcaagtacaaacgtatccgctacaagggtattatctgtgacaagtgcggcgtg
gagattgcccgtgccaaggtacggcgtgaacggatggggcatattgaattggcttgtccg
gtaggccatatctggtttacccgcggcattcccagccgggttggcttgctgcttaacctt
tctacccgcagtcttgaaaggataatttattattcgcatttcattatcactgcggtaaat
gatgaagcccgtgcaaaggctatcaaagaccttgaggttatctcatcccagagggtagca
gacaagggcagtgaagtagatactcgggtagcccaaatggaagctgaagatgctactgtt
gaagctataaaccagattcgccgtgacttctcaaccgaacgagagcaaatggaagaagat
atccagttgcttatagaccagctgaaagatctgcaaaagggcaatctgctgaccgaaaac
cagtattacgaactgaaacaacgtttcagcaatgtttttgaggcatctatgggtgctgaa
gccctgctgaaactactttcatatattgatatggacaaggaacggagcaaacttattcag
gaaacccgctccacttccggccagcgccgcaaaaaggccggcaaacaactccagctggta
gaagccttccgccgctccagcaacaaacctgaatggatgataatgactgttctgccggta
ctgccgccagaccttcgtcccatggttcagcttgatggcggccgttttgccaccagtgac
ctgaatgacctttacagaagggttattaaccgtaacaaccgtctccagcacctgatggaa
atcggggcaccggagattattatccgcaacgaaaagcgcatgcttcaggaagcggtagat
tcgcttattgataacggacgccgaggcaagagtgtagctgtaaatggtgaccacaaggcc
aaatccctttccgacctgcttcgcggcaaacagggacgcttccgccagaacctgctaggt
aaacgggttgattactctggtcgttctgttatcgtggtagggccttcactcaagctttca
cagtgcggtttgccccgccgtatggcgctggagctgtttaagccctttgtcatgcaccgt
ctggtacgggatgggttagcccccaatatcaagagtgcccgccgtttggtagagcgcgcc
cgcccggaggtttatgatattttggaagaggtagtcaaggacaggccggttctgttgaac
cgtgctcctactttgcatcgccttagtatccaggcctttgaaccggtacttatagacggc
agcgccctcaggcttcacccgctggtctgttcagcctttaatgctgactttgacggtgac
cagatggctgtccacgtgcctctttccaaagcggccgtgaaggaagcccgggaaaccatg
ctttctattcataatatgatgcttccctccagtggtgaaccggtagtatctcccagcctt
gacatggtctttggctgttactacctgaccaccactcgtccgggtgccaagggtgagggc
aaaatattcggtgactttgaagaagccaaacgttattatgaaatgggcatcattgacctg
cgggctattatcaaagtccgggacggcaagggtaatatgctggaaaccactaccgggcgg
attatctttaatgatgtcctgcccagggctgtagagttccagaatatggatatacccaaa
tccgccattaaaaagattatcggacgctgttacaagatactttccagccaggatatggct
atcatgctggacaagataaaagaactgggtttcaaatttgctaccagttccggtatttcc
atcgccatgagtgatatttcagtaccgcgtgaaaaaaccaagctggtagccgccgctgat
gagcggactgccattgccgaaggtcagtttgcccgcggccttatcaccgaggacgaacgc
tacaacagtattattgaaacctggatggaaactactgaccgcattactgatgctattcag
gcgggctttgacaaacagggttctgtttacatgatggctaactctggtgccaagggtaat
atttcccagatacgccagatggctggtctgcgcggtcttatgactaacccttccggccgt
atcattgacttccccatcaagtcttccctgcgtgaaggtttgacagccttggagtacttc
atatccacccatggtgcccgtaagggtttggcggatactgctttgcgtacttccggttca
ggttacctgacccgccgccttatagacgtaactcaggatgttattattcttcaggaagac
tgcggcactgcaaacggtacctggattatagaacccaaagaaaagggtatgttgccgccg
ctggttgaccgcatacttggccgctggacggctcataatgtggttcacccccagactggc
gaaattatcgtggataacaatgaagagattgatgaaatcaaggctaaggctatcggcgaa
gccggtattaccgaggtatttgtacgctctcctcttacctgtgagtccactcacggcatg
tgccgccgctgctacgggcgtgatcttggtcgtgttcgtctggtagatatgaataccgca
gtcggtattattgccgcccagagtatcggtgaacccggtacccagctgacacttcgtacc
ttccacaccggcggtgtggtaggcgtagatatcactaccggtcttcccagagttgaagag
ctctttgaggcccgtccgcccaaagttcagtcaattatctccgagatagacggtgtggta
gaggttattgaaaatgaaaacggccgccatatccgcatagcctcagatgaagtctatcag
gatgaatacgaattgccttccggttggaaaactcaggttcaaagcagacagtgggtagat
tccggtatggtattggcttcacctgaactggaaggtaaatccaaggcagttgttcagagt
gaccagaatgtggttgccagagtggccggtgaagttaccatagagggtaatcttattacc
atcaagtacagcgaaagcgaagaacgggaatacaccatacctgccgctatgcagataaag
gttaaaaccggggataccatccgtgccggacaacagttgactgacggctcaataaacccg
caggatattctgtccattttgggcagagatgccgttcagaaatatctggttgaagaagtc
cagaaggtttactactctcagggtgtacatattaacgataagcacatagaggttattgcc
cgccagatgcttatcaaggtacgtattgattcttccggtgatacagaccttgttccgggt
gaactggtagacaagttccgctacgaggatatcaatgccaaggttctggccgaaggcggt
gaaccggcaactgctcacaccgtacttatgggcattacccgtgcctcccttagcactgaa
agctggctggctgcggcttccttccaggaaaccacccgcgtgcttactgatgccgctatt
tacggcagagtagacaagctatccggcctgaaggaaaatgttattattggtaagcttatc
cctgcccagtgcaagtcctgcaaagaagctactattgaaagggctgaacggatagctgcg
gccgcttctgcacctgccatgagcggtctgccggagaattgcctctag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-DEG (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (31)   

Download RDF

DBGET integrated database retrieval system