KEGG   Dehalococcoides mccartyi CBDB1: cbdbA801
Entry
cbdbA801          CDS       T00273                                 
Name
(GenBank) conserved hypothetical protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
deh  Dehalococcoides mccartyi CBDB1
Brite
KEGG Orthology (KO) [BR:deh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:deh03016]
    cbdbA801
Enzymes [BR:deh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     cbdbA801
Transfer RNA biogenesis [BR:deh03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    cbdbA801
 Prokaryotic type
   tRNA splicing ligases
    cbdbA801
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: CAI82950
UniProt: A0A916P4U3
Position
650413..651873
AA seq 486 aa
MTSPWHGILKKIDDYRWEIPQSYKVGMRVPGLVYASERMLNQIWEEHAIEQIANVAFLPG
IMGRSMAMPDIHWGYGFPIGGVAATRISDGVISPGGVGFDINCGTRLLRTNLSVEEVQPK
IDELLNELFSKIPSGVGSSGNIKLSGTDIDNVMTRGGSWALEKGMGEAEDIKLTEESGSL
SGANPDKVSNKAKTRGASQLGTLGSGNHFLEVQVVDEIFDPEVAAVFGVQALGQVLFLIH
TGSRGLGHQVCTDYVQLLNEAVKKYGINLPDRQLACAPLKSDDGQNYLAAMACAANYAWA
NRQCITHWARDAFMKVFEKGRLDLGMDQIYDVAHNIAKIEEHMVDGKVQNVCVHRKGATR
SFPAGRPEIPAVYRKVGQPVIIPGDMGRYSYVAVGTETAMRETFGSTCHGAGRILSRGAA
KKTTSGTQLLDTLRSQGISIRVGDIGSLAEEASEAYKDVADVVEVTHKAGIARNIFKTRP
LGVIKG
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgaccagcccgtggcatggaatacttaaaaaaatagatgactaccgttgggaaatcccc
cagagctacaaagtaggtatgagagtgcccggtctggtatatgccagtgaacgtatgctc
aatcaaatatgggaggagcatgctatagagcaaattgccaatgtggcttttttgcccggt
attatgggcaggtctatggctatgcctgatattcattggggttacggtttccccatcggc
ggagtggccgctaccagaataagtgacggggtaatctcacccggcggcgtaggttttgat
ataaactgcggaacccgccttttaaggacaaacctcagtgttgaagaagttcaacccaag
atagatgagcttttgaatgagcttttttccaaaataccctccggggtgggtagcagcggt
aatataaagctaagcggaacagatatagataatgtaatgacccgtggcgggagctgggct
ttggaaaagggtatgggcgaagccgaagacattaaactgactgaagaatccggcagttta
tctggtgctaatcccgacaaggtttccaataaggccaagaccagaggtgcatcccaactg
ggtacactgggttcaggcaaccattttttggaagtacaggttgtagatgaaatatttgat
cctgaagtagcggcggtgttcggagttcaggcgctgggtcaggtactttttcttatccat
accggttcacggggtttggggcatcaagtatgtactgactatgtgcaactgttaaatgaa
gcagtcaaaaaatatggcataaatttgcctgaccgccagctggcttgtgccccgctaaaa
tcagacgatgggcagaactatctagccgctatggcctgtgccgccaattatgcttgggct
aaccgccagtgcatcacccactgggcacgtgatgccttcatgaaggtatttgaaaaaggc
cggcttgatttaggtatggaccagatatacgatgtagcccataatattgccaagatagaa
gagcatatggtagacggcaaagtgcagaatgtatgtgtccaccgtaaaggtgccacccgt
tctttccctgccggccgccctgagataccggctgtttaccgaaaagtcggacagcctgtt
ataatacccggagacatgggcagatactcgtatgtagctgtaggtaccgagactgccatg
cgtgaaactttcggttctacctgccatggcgcaggccggatactcagccgcggtgcggct
aagaaaactacttccggtacacaactgctggatactctcaggtctcagggtataagtata
agggtgggtgacataggcagtctggcagaagaagcctcagaagcctacaaagatgtggct
gatgtagtggaagtaacccacaaagcaggtattgcccggaatatatttaaaaccagacca
ttaggagtaatcaaaggttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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