KEGG   Desulfuromonas sp. DDH964: DBW_3000
Entry
DBW_3000          CDS       T04368                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
deu  Desulfuromonas sp. DDH964
Pathway
deu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:deu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DBW_3000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:deu03019]
    DBW_3000
   03400 DNA repair and recombination proteins [BR:deu03400]
    DBW_3000
Enzymes [BR:deu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DBW_3000
Messenger RNA biogenesis [BR:deu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     DBW_3000
DNA repair and recombination proteins [BR:deu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      DBW_3000
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII
Other DBs
NCBI-ProteinID: AMV73308
UniProt: A0A143BAD4
Position
complement(3180185..3181993)
AA seq 602 aa
MNQPQAAEVLQSIFGYGTFRPYQEEIIRTLIAGEDAFVLMPTGGGKSLCYQIPALCRPGV
GIVVSPLISLMKDQVDALLANGVRAAFYNSSLKSAEAKQVLAKLHAGQLDLLYLAPERLL
SEEFLARLQEVPIALFAIDEAHCVSQWGHDFRPEYIQLGRLRRDFPGIPLLALTATADPQ
TRGDILDRLQLRQARIFIAGFDRPNIRYHVVDKQKPFAQLQAFLKGRRGEAGIVYALSRK
RVEEVASKLAAAGIRAAAYHAGLPDAERRRVQEAFLRDDLQIVVATVAFGMGIDKPNVRF
VVHYDLPKNIESYYQETGRAGRDGLPSEALLLFGYGDVAIARGLIERGGNPEQKRVELHK
LNAMVGFAEAQNCRRRVLLGYFGEHLAEDCGNCDVCDSPPESYDATIDAQKALSCVYRVG
QRFGVGHVVEVLRGAASQRIQELGHDRLSTYGLGADQPAEAWSGLILQLIHLGYLRQDVA
NYSVLKLTEAARPLLRGEARLTLAKPRLKVAAQKKPARKVASDLTYDEALFDNLRALRKR
LADDAGVPPYVIFSDVTLVEMAAYLPESPQALLGVTGVGKLKLQKFGGEFLEEIRSYLAG
RG
NT seq 1809 nt   +upstreamnt  +downstreamnt
atgaaccaaccgcaagctgccgaggtgctgcagtcgatcttcggctacggcaccttccgc
ccctaccaggaagagatcatccgcaccctgatcgccggtgaggatgctttcgtcctgatg
ccgaccggcggcggcaagtccctttgctaccagattccggcgctctgtcggccgggggtg
gggattgtcgtctcgccgctgatctcactgatgaaggaccaggtcgacgccctgctcgcc
aacggcgtgcgcgccgccttttacaactcctcgctgaagagcgccgaggcgaagcaggtc
ctcgccaagctccatgccggtcagctcgaccttctctatctcgcccccgagcgactgctg
agcgaagagttcctggcgcgactgcaggaggtgccgatcgccctcttcgccatcgacgag
gcccactgcgtctcccagtgggggcacgacttccgccccgagtatatccagctcggccgt
ttgcgccgggactttcccggcattccgctcctcgccctcaccgccaccgccgacccccag
acccgcggcgatatcctcgaccggctgcagctgcgccaggcccggatcttcatcgccggt
ttcgaccgccccaacatccgctaccacgttgtcgacaagcagaaacccttcgcccagctg
caggcctttctgaaagggcggcgcggggaggccggcatcgtctacgccctctcccgcaag
cgggtcgaggaagtcgccagcaagctggcggcggcagggatcagggcggccgcctaccat
gccggactcccggatgcggaacggcggcgggtgcaggaggcctttctgcgcgacgatttg
cagatcgtcgtggcgacggtcgctttcggcatggggatcgacaagccgaacgtgcgtttt
gtcgtccactacgacctgccgaagaatatcgaaagctactaccaggagaccggtcgtgcc
ggccgcgacgggctgccgagcgaggcgctgctcctctttggctacggcgatgtcgccatc
gcccgcggtctgatcgagcggggagggaacccggagcagaagcgggtcgagctccacaag
ttgaacgccatggtcggttttgccgaagcgcagaactgccggcgtcgggtgctgctcggc
tattttggcgagcacctcgccgaggactgcggcaactgcgatgtctgcgactctcctccg
gagagctacgacgccaccatcgatgcccagaaggccctctcctgcgtctaccgggtcggc
cagcgcttcggcgtcggtcacgtcgtcgaggtgctgcgcggcgccgcctcccagcggatc
caggagctcgggcacgaccggctctccacctacggcctcggcgccgatcagccggccgaa
gcctggagcgggctgatcctccagctgatccatctaggctacctgcgccaggacgtcgcc
aactactcagtgctgaaactgaccgaggcggcgcggccgctgctgcgcggcgaggcgcgc
ctgaccctggccaagccgcgcctgaaggtggctgcgcagaaaaaaccggcccgcaaggtc
gcttcggaccttacttacgacgaggccctcttcgacaatctgcgggcgctgcgcaagcgt
ctggccgacgatgccggggtgccgccctacgtcatcttcagcgatgtgaccctggtcgaa
atggcggcctacctgccagagagtccgcaggcgctcctcggcgtcaccggcgtcggcaag
ctcaagttgcagaaattcggcggggagtttctggaggagattcgcagctacctggcggga
cgggggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system