KEGG T02668: DFA

Cavenderia fasciculata (cellular slime mold): DFA_12362

Entry

DFA_12362         CDS       T02668

Symbol

pirA

Name

(RefSeq) component of SCAR regulatory complex

K05749

cytoplasmic FMR1 interacting protein

Organism

dfa Cavenderia fasciculata (cellular slime mold)

Brite

KEGG Orthology (KO) [BR:dfa00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dfa03019]
    DFA_12362 (pirA)
Messenger RNA biogenesis [BR:dfa03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     DFA_12362 (pirA)
   Factors involved in mRNA localization
    Other mRNA localization factors
     DFA_12362 (pirA)

SSDB

Motif

Pfam:

FragX_IP CYRIA-B_Rac1-bd

Other DBs

NCBI-GeneID:

14866241

NCBI-ProteinID:

XP_004366105

UniProt:

F4QDG7

Position

Unknown

AA seq 1866 aa
MATTSLMPDVNERVDILETFPFQDDQSLIEEIPSTIGYIPYNSSHFVDRGAFESKWAEET
VAMEKMDDLLRQGETFINMVYTYRSCSKALPQVKTSEQANKQQIYEGTFEVLEPEIKKLK
DLMYFQRDTIKIFCDYIKKLASTYDKKKETITVSESLVTYLVKLLDLFALLDALKNVKAC
LNNDFSFFKRASGFLRKQMTGAEDQTQENHTLYLFLAHQNSITTSLKQELHNIDKFEEVL
PVLVNQCADFMEKEKYILPSEKHCYLRVMPYVLYLIDENDSKHNIFKNKNLNLSRYAKIF
RKNPVVPLYGDMQITLEALVKRSPHFDEKAWGTSTLDSKVAQEYEIINYLDSTKSLYHEY
VARFANMINDVKAAKTRAPKDPLPMPETDVKAIVLLGLRILSDWSSRVLQQSAWKYSKPN
NDAAIPAQFDYERVVKYNYSADERVALIQFIAMIKGLGSLMVKHESVLEPIIKRSIHGEL
QQFIQNQLRDTIKSFAKKEKKKDHIKIELAQLKTIAADWLGGSEPVENANSKKKDEEKLQ
IPIRAVPPSTTQLDLILTIISSLMNKKKEFSSTQFAELETFHNHAYFYRYLLNLSATVNQ
ITDLADLWYREFYLELNNRVQFPIETSLPWILTDHILESDDPSLMEYIFYPLGLYNDTAH
RALQSLNQRFLYDEIEAELNLCFDQLLYKLSGKIFAHFKTQACSLLLDKNYKAQLELVHF
AGKFNVPKSRFDVVLRQKHITLLGRSIDLTALLAQRQNNFVRQNIDYAISRYEASDLTSV
IELETQLNSIRLTYKLLSEFFTLDPFESMMNEVNESTSLISYHGRIAFHTIFELMTDLAP
NYTFNSITQRFIKAPYLFTEDIQRENMPKTNPVYLFGNKHLNAAYANSAELYKHFVGAPH
IHSLLRVVGKKNLPLIIFECLRNMEVKIVSVLTPYVRELISSGMPASQKLPIYDYGTEGC
YGYFQLKLRDIYTYPDLRPQVIQCFRELGNSIIFMNLLDQQMVQSECSSFIQAAPFLGVT
PDTWYSDNTGTDPTTQSPLYAQLAKLAQILESKPEVTKAPEYFKEIVNNAWRADKFYRPT
GANPSIFKNVLQRITQILNSVRAEWSGLTPDNGVINIDTSTEFYRLWSALQFVTCWPLTN
ENDKSYHELFGDGFMWAGCTIIHFLGQQNRFELFDFCYHILNVEDAAAVRSDKPALKNFF
KTASFMKDMNSQIFSILNAYCPPPSPSNMILSPPATEQAEQFIITTTEVTNREVDDNSNS
NSNVNVVNNGNNNNNSMPPPPPPPPMIDDMPLPPPFGMPPPPPPIDREREMEEEEEDINI
YICPLNINIDNTINEYLNNRLIFECCLKATSTLSLRIWSNESIERLSLLLVCKKWYFTII
SNVRQLTMVDGNFFALSNRLHQFGQLERLELVVPNHPKSIITFISQIFTNQKKNVSSLSS
IDLSMSSITSKHLSILYKSFLDKFQIDHESDSDDDENESDESMIDSSGDDDDKDHRANKR
FSRFEKQLKNSKSRIIPNISDQDQFHLDEFNLSSNKLDNQGISYLVTLLNGFIKIKNLIL
ESCESLDGLEFIGPLLQDNLSIKNNKTEYNSIITLSNGLRKNSILSHLSLKGCDIEGWGA
LSLGDTMAINKTLTHLDISDNLFGSGGFTNLALKLNGNDSLIHLNASGNHIESIGFSQIF
NTLSMNNTLTYLDLSRNQMNTTNEIGNSLVESIANNMGLETLLLSECSINNDHFIQLSLA
ISNNKCLKKLDLSRNMINNIKSLILILIKNSTLKSLNLARMMVSIPEQHLQVLFYYLTRV
AMPRDVMAAAAGDWLDDGGSSMSVDMVVHRLEHVNLMPKAALSGSCVRRLNQIVALSKLC
FLQLKF

NT seq 5601 nt +upstreamnt +downstreamnt
atggcaacaacatcattaatgccagatgtcaatgaaagagttgatatattggagacgttt
ccatttcaagatgatcaatctttgattgaggagattccaagcacgattggatacattcca
tacaatagttcacactttgtagatcgtggagcctttgaaagtaaatgggccgaagagact
gtagcaatggaaaagatggacgatttgttgcgtcaaggagagacctttatcaacatggtc
tacacgtatcgtagttgctccaaggcattgccacaagtcaagacatcggaacaagccaac
aaacaacaaatctacgaaggtacctttgaagtgttggagccggaaattaaaaaactcaag
gatctcatgtactttcaacgtgacactatcaagatcttttgtgactatatcaagaaattg
gcttcaacctatgacaagaaaaaggaaactatcactgtatctgaatctcttgtcacttat
cttgttaaattattagatctatttgctttattggatgctttaaaaaatgttaaagcttgt
ttaaataatgatttttcttttttcaaaagggcaagtggatttttaagaaaacaaatgaca
ggagcagaagatcaaacacaagagaatcatacattatatttatttttggcacaccaaaat
tccattacaacttcgttgaaacaagagttgcataatattgacaagtttgaagaagtgttg
ccagtacttgtcaatcaatgtgccgactttatggaaaaggaaaagtatatcttgccatcg
gaaaagcattgttatctccgtgtcatgccatacgtattgtatttgatcgacgagaatgac
tccaagcacaacattttcaaaaacaagaacctcaatttgtctcgttatgccaaaatcttt
agaaagaatcctgtagttccattgtatggtgatatgcaaattactttggaagctcttgtc
aaacgttcacctcattttgatgaaaaggcttggggtacttcaactttggacagtaaagtc
gctcaagaatatgaaattatcaattacttggactctaccaaatcgctttaccatgaatat
gtagcacgttttgccaatatgataaatgatgttaaagcagccaagactcgtgcacccaaa
gatccattaccaatgccagagactgatgtcaaagctatcgtattacttggccttagaatc
ctttccgattggtcatcacgtgtattacaacaaagtgcatggaagtattcaaaaccaaac
aatgatgctgccattccagcccaatttgactatgaacgtgtagtcaaatacaactattcg
gctgacgaacgtgtcgcgttgattcagtttatcgccatgatcaagggtctcggttccttg
atggtcaaacacgaatctgtcctcgaaccaatcattaaacgttctattcacggtgaactc
caacaatttattcaaaatcaattgcgtgacactatcaagagttttgccaaaaaggaaaag
aaaaaggatcatatcaaaattgaattggctcaactcaaaacgattgcagcagattggctt
ggtggatcagaaccagttgaaaatgcaaattcaaagaaaaaggatgaagaaaagttacaa
attccaataagagctgttcctcctagtactactcagttggacttaattcttactattatt
tcatcattgatgaataagaaaaaggaattttcatcaacacaatttgcagaattggaaact
ttccataatcatgcctacttttatcgttatctactcaacttgtcggcaactgtcaatcaa
attactgatcttgcagatctttggtatagagagttttatcttgaattgaataatcgtgtt
caattcccaattgaaacttctctaccatggattctaacagatcatattttggaaagtgat
gatccatccttgatggaatatattttctatccattgggtctttacaatgatacggcacat
cgtgcattgcaatcattaaatcaaagatttttatatgatgaaattgaagcagaattgaat
ctctgttttgatcaattattatataaattgtctggaaagatttttgctcattttaaaact
caagcttgttccttgttgctcgacaagaattataaagcacaattggaattggttcatttt
gctggtaaatttaatgtaccaaaatcaagattcgatgtagtacttagacaaaaacatatt
actctgttgggtagatcaattgatttgactgcattgttggcacaacgtcaaaacaatttt
gtacgtcaaaatatagattatgcaatttctcgttatgaagcttcagatttgacatcggtc
attgaattggaaactcaactcaattcaattcgtttgacctataaattgttgtcggaattt
ttcacattggatccatttgaaagtatgatgaatgaagtaaatgaaagtacatcacttatt
tcatatcatggtcgtattgcattccataccattttcgaattaatgacagatttggcacca
aactatacattcaactcgattactcaacgttttatcaaggctccctatcttttcactgaa
gatattcaacgtgaaaatatgccaaaaaccaatccagtctatttgtttggtaacaaacat
ctcaatgctgcctatgccaattcagcagaactttataaacattttgttggagctcctcat
attcattcattactcagggtcgttggtaaaaagaatttaccattgatcatttttgaatgt
ctaagaaatatggaagtaaagattgtatctgttctgacaccctatgttagagaattaatt
tcatctggtatgccagcatcacaaaaactaccaatctatgattatggtacagaaggttgt
tatggttatttccaacttaaattgcgtgacatttatacctatcccgacttgcgtcctcaa
gtcattcaatgttttagagaattgggcaattcaatcatctttatgaacctgctcgatcaa
caaatggttcaaagtgaatgttcatcatttattcaagccgctccatttttgggtgtcaca
ccagacacttggtattcagacaatacaggtaccgatccaaccactcaatctccactctat
gctcaactcgccaaactcgctcaaatcttggaatccaaaccagaagtgaccaaagcccca
gagtatttcaaggaaattgtcaacaatgcatggcgtgccgacaagttttaccgtccaact
ggtgccaacccatccatctttaagaatgtcctccaacgtattacacagatcctcaactct
gtacgtgctgaatggtcaggtctcactccagacaatggtgtcatcaacattgatactagt
accgagttttaccgtctttggtctgctcttcaatttgtcacttgttggccactcaccaat
gaaaatgacaagtcttatcacgaactctttggtgatggtttcatgtgggccggttgtact
atcattcatttcctaggtcaacaaaatcgttttgaattgtttgatttttgttatcacatt
ttaaacgttgaagatgctgctgcagttcgttctgataaacctgctcttaaaaactttttc
aaaacggcatcgtttatgaaagatatgaatagtcaaatcttttcaattctcaatgcctat
tgtcctcctccatctccttccaatatgatcctatcccctcctgcaactgaacaagctgaa
caatttattattactactactgaagttactaatcgtgaagttgatgataatagtaatagt
aatagtaatgtaaacgtcgtaaataatggcaataataataataatagtatgccaccacca
ccaccaccaccaccaatgattgatgatatgccacttcctccaccatttggtatgccacct
cctcctcctccaatagatagagagagagagatggaagaagaagaagaagatattaatatt
tatatatgtccattaaatattaatatagataatactataaatgaatatttaaataataga
ttaatatttgaatgttgtttaaaagctacttctactttatctctaagaatatggtcaaat
gaatcaatagaaagattatcattactattggtttgtaagaaatggtattttacaatcatt
tcaaatgttagacaattgacaatggtagatggtaacttttttgcattgtctaatcgttta
catcaatttggtcaattggaacgtttagaattggttgttcctaatcatcccaaatcaatc
attacatttatttcacaaatctttacaaatcaaaagaagaatgtatcatctctatcatct
attgatttatcaatgtcatctattactagtaaacatttatctatactttataaatcattt
cttgataaatttcaaattgatcatgaaagtgatagtgatgatgatgaaaatgaaagtgat
gaatcaatgattgatagtagtggtgatgatgatgataaagatcatagagcaaataaaaga
ttctcaagatttgaaaaacaattaaaaaattcaaaatctagaatcataccaaatatatct
gatcaagatcaatttcatcttgatgaattcaatctttcaagtaacaaattggataatcaa
ggtatatcttatcttgttactttattaaatggttttattaaaattaaaaatttaatttta
gaaagttgtgaatcattagatggattagaatttattggtccattattacaagataattta
tcaattaaaaataataaaacagaatataattcaattataacattatcaaatggattaaga
aaaaattcaatattatctcatttatcattaaaaggatgtgatattgaaggttggggtgca
ttgagtttgggtgatacaatggctataaacaagactttgactcatttggatatatctgat
aatttatttggtagtggaggatttacaaatttggctttaaaattaaatggtaatgattca
ttgattcatttaaatgcatctggaaatcatatagaatcaattgggttttctcaaatattt
aatactctatcaatgaataatacattgacctatttggatttatcaagaaatcaaatgaat
accacaaatgaaattggcaatagtcttgtggaatcgattgcaaataatatgggtctggaa
actttgttgctttcggaatgttcaatcaataatgatcattttattcaattgtctttggcc
atttcaaataacaaatgtttaaaaaaattggatttatcaaggaatatgataaataatatt
aaaagtttgattttaatattaattaaaaattcaacattgaaaagtttaaatttggctaga
atgatggtatcgataccagaacaacatttacaagtgttgttttattatttgacaagagtt
gcaatgccaagggatgttatggctgctgctgctggggattggttggatgatggtggtagt
agtatgtcggtggatatggtggttcatcgtttggaacatgttaatttgatgccaaaggcg
gcattgtctggttcttgtgtgaggaggttgaatcaaatagtggcgctttctaaactttgc
tttttacaattaaagttttaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (121)   
   KEGG ORTHOLOGY (1)   
   RefGene (117)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (129)   

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