KEGG   Desulforamulus ferrireducens: B0537_06045
Entry
B0537_06045       CDS       T04823                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
dfg  Desulforamulus ferrireducens
Pathway
dfg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dfg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B0537_06045
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dfg03019]
    B0537_06045
   03009 Ribosome biogenesis [BR:dfg03009]
    B0537_06045
Enzymes [BR:dfg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     B0537_06045
Messenger RNA biogenesis [BR:dfg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     B0537_06045
Ribosome biogenesis [BR:dfg03009]
 Prokaryotic type
  rRNA helicases
   B0537_06045
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 AAA_19 PIN_2 UvrA_inter Ferritin_2 AAA_22
Other DBs
NCBI-ProteinID: AQS58680
UniProt: A0A1S6IV86
Position
1188903..1190318
AA seq 471 aa
MSSFYELGLSPKVTEAVLNMGFEEATPIQEKTIPIALAGKDLIGQAHTGTGKTAAFGIPM
VEKLSGELEQLQGLVITPTRELAVQVAEELNKIGQAKGIRTLPVYGGQDIVRQIRALKKK
PHIIVGTPGRLMDHMRRKTIRLDDIKIVVLDEADEMLNMGFVEDIEFILGETPQERQTLL
FSATLAKQIQDLAQRFMRSPEFVGIKAKGVTVPSIDQSYIEVQEKQKFEVLSTLLDIQSP
ELAIVFGRTKRRVDELSEALNKRGYSAEGIHGDLTQSKRESVLRQFKEGTIEVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGEKGEAITLVTPREINHLRLIERITK
HKINRMPVPTIRDAIAGQQRATVEKLMRIVEEEGYKQYQGLAKDLLAETDSITLLAAALK
LLTKEPDRTPVQLTEERPLRSKKASASNKNARNKRALPGTKKRFTGVRGKN
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgtcaagtttctatgaactgggattaagtcccaaggtgacagaagcggtactaaatatg
ggttttgaagaggctacacctattcaagaaaaaactattcccatagccttggcaggaaaa
gatcttattggccaagcccacaccggtactggtaaaactgccgcctttggtatacctatg
gtggagaaattatcaggagaattggagcagcttcaggggttggtaattacccccaccaga
gaattggctgtgcaggtggctgaggaattaaataaaataggtcaagctaaaggtataaga
accttgccggtgtatggtgggcaggatattgttcgtcagattagggctcttaagaagaaa
cctcatattattgttggtactcccggacgtctcatggatcatatgaggaggaaaacaatt
cgcctggatgatattaaaatagttgtgctggatgaagcagatgaaatgcttaatatgggt
tttgtggaggatatagaatttatcctgggagaaactcctcaggagcgacaaacccttctt
ttttcagctaccctggccaaacagatccaggatctggcccagcgttttatgcgtagcccc
gagtttgtgggtatcaaagccaaaggggttacggttcccagcatagatcaaagctatatt
gaagtacaagaaaagcagaaatttgaggttttatcaacactcctggatatccaatccccg
gagttggccattgtttttggccgaaccaagcgtcgtgtggatgaactctctgaagcatta
aataagcgcggttattcagcagaaggaatccatggtgacctcacccagtcaaaaagggaa
agtgtgctgcgtcagtttaaggagggaaccattgaggtactggtggccacggatgtggca
gctaggggattagatatcagtggggtaacccatgtttataattttgatattcctcaagat
ccggaaagctatgtgcaccggattggtaggaccggtcgtgcgggtgaaaagggagaggct
attactctggttacaccacgggaaataaatcacttgcggttaattgaaaggatcacgaaa
cataaaatcaaccgcatgccggttcccaccattagagacgccattgctgggcagcaacgt
gccacggtggaaaagctaatgcggatagtggaggaagaagggtataaacaataccagggg
ttagcaaaggatttgttagccgaaacagattccatcaccctgctggcagcagcattaaag
ctactcacgaaagaacccgatagaactcctgtacagctgacagaggaaagacccttgagg
agcaaaaaggcttcagcctctaataaaaacgccaggaataaacgggctctcccaggtaca
aaaaagaggtttactggggtgagagggaaaaattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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