KEGG   Dehalogenimonas formicexedens: Dform_01625
Entry
Dform_01625       CDS       T04654                                 
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dfo  Dehalogenimonas formicexedens
Pathway
dfo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dfo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Dform_01625 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dfo03400]
    Dform_01625 (ligD)
Enzymes [BR:dfo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Dform_01625 (ligD)
DNA repair and recombination proteins [BR:dfo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Dform_01625 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S CsgE
Other DBs
NCBI-ProteinID: APV44946
UniProt: A0A1P8F904
Position
complement(1552003..1552911)
AA seq 302 aa
MPQKIKTNLDGHEIELTNLDKVFFPDGTTKSDLIRYYLKIATVMLPHLEGRPLSFQRFPD
GVDAEGFFQKQAPRSYPDWIKRISQGQKEIVDYASADSAADLVYFAQQAVIVFHTALARG
DKADYPDLMIFDLDPQTDSFEPVRQTAFGLKELLDGLDLKSYLKVTGGRGLHVTVPLDRG
DNFENVHGFALRLARFYQTRHPDDTTTEMSKAKRGSRVFIDVNRNHFSQTAVAPYSVRAR
KTPSIAAPITWEELESPDLKPDGYTIENIFKLLERRPDPWKNIYKNGQSIKGAAEKLKKL
ES
NT seq 909 nt   +upstreamnt  +downstreamnt
atgcctcaaaaaatcaaaaccaaccttgatggacacgaaatcgaactgactaacctggat
aaggtgttcttcccggacggcacgaccaaaagcgaccttatccggtactatttgaaaatc
gcgacggtgatgctgccgcacctggagggaaggccgctgtcattccagcggttcccggac
ggcgtcgatgcggagggatttttccaaaaacaggccccccgaagttatccggactggatc
aagcggatctctcaggggcaaaaagagattgtggactatgcgtcggcggactccgcggcc
gacctggtctatttcgcgcagcaggcagtcatcgtcttccataccgccctggccagaggc
gacaaggcggattatcctgacctgatgattttcgaccttgatcctcagaccgattcattc
gaaccagtgcgtcagacggctttcggattaaaagaattgctcgatggcctcgatctgaaa
agctacctgaaggtaaccggcggccgcgggttgcatgtaaccgtgccgctggaccgcggc
gataattttgaaaacgttcacggctttgccttgaggcttgccaggttttaccagacccgg
cacccggatgacaccaccacggagatgtccaaagccaagcggggcagccgggtattcatc
gatgtcaaccgcaaccactttagccagacggcggtggcgccatattcggttcgtgccagg
aaaactccgtcgatcgctgcgccgattacctgggaggaacttgagagccccgatcttaaa
ccggacggctataccatcgagaatattttcaagctgctggaacgcaggccggatccctgg
aagaatatctataaaaacgggcaatcgatcaaaggcgcggctgagaagctgaaaaagctg
gaatcctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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