KEGG T00353: Dgeo

Deinococcus geothermalis: Dgeo_0826

Entry

Dgeo_0826 CDS T00353

Definition

helicase RecD/TraA

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

dge Deinococcus geothermalis

Pathway

dge03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:dge03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 UvrD_C_2 AAA_19 Viral_helicase1 AAA_11 HHH_5 AAA_28 PhoH AAA_16 AAA_22 AAA_17 ArgK IstB_IS21 Helicase_RecD NTPase_1 AAA_18 T2SE AAA_25 TPP_enzyme_M AAA KTI12 Zeta_toxin

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

884570..886750

AA seq 726 aa
MREPPGVFPSRGVRARKGAILAGMSAGLPTEPFRVTGGVNKVRFRAESGFTVMSARLRNA
EGEDPDATVIGVMPPLEVGDSFSAEVLMEEHREYGHQYRVLNMVLEAQPADLTEAGVAAY
LEARVGGVGKVLAGRIARTFGPATFDVLEQEPEKLLQVPGVTASTLHKMVSSWSQQGLER
RLLAGLQGLGLSISQAQRAVKHFGEAALERLQADLFALTEVEGIGFLTADRLWQAQGGAQ
DDPRRLTAAAVYALQQAGQQGGHAFLPRARAERGVLHYTRVSPEQARLAVETATELGRLA
DDPTPAGESRIYLPHVLRTEKKLAGLIRTLLATPPAGAEWAVPVGAAQGLSEEQARVLQL
LEDHRLVVLTGGPGTGKSTATRAVADLAERLGLEVGLCAPTGKAARRLGEVTGRPASTIH
RLLGYGPAGFRHNHLEPAPYDLLIVDEVSMTGDALMLSLLAAVAPGARVLLVGDTDQLPP
VDSGLPLLAIAQTAPTVRLSTVYRQAAENPIIRAAHGLLHGQAPSWGDPRLDLTETEPDV
GARRVALMVRDLGGPGRVQVLTPMRKGPLGVETLNRHLQALFNPGEGGTRIADGEARPGD
VVVQTKNDYQNEVFNGTVGTVLKAEGGRLTVDFDGNIVELAGAELFNLQLGYALTVHRAQ
GSEWPTVLGVLHEVHMPMLSRNLAYTALTRARERFLAVGSASAWEKAAGRQREERNTALL
ERIRRR

NT seq 2181 nt +upstreamnt +downstreamnt
ttgcgcgaaccccccggggtttttccgtcacggggggttcgcgcgagaaagggcgctatc
ctggcgggcatgagcgctggcctcccgaccgaacctttccgcgtgaccggaggtgtgaat
aaggtccgcttccgtgcggagagcggctttacggtcatgagtgcccggctgcggaatgct
gaaggcgaggaccctgacgcgaccgttataggcgtgatgccgccgcttgaagtcggagac
agcttcagcgcggaggtgctgatggaggaacaccgcgagtacggccatcagtaccgcgtg
ctgaatatggtgctggaggcgcagcccgccgacctgacagaggcaggggtagcggcctat
ctcgaagcccgcgtgggaggagtgggcaaggtgctggccggacggatcgcccgaactttt
gggccagccaccttcgacgtgctggagcaggagccggagaaattgcttcaggtaccgggt
gtcacggcctcaacgctgcacaagatggtgtcgagttggtctcaacagggcttggagcgc
cggttgctcgcgggactgcaagggctagggctgagtatctcgcaggcccagcgggccgtg
aagcacttcggcgaggcggcgctcgagcggctgcaagcagacctctttgcgctgaccgaa
gtagaggggattggctttctgaccgctgaccggctgtggcaggcgcaggggggggcgcag
gatgatccccgccgcctgaccgccgccgcggtgtatgcgcttcagcaggccgggcagcag
ggcgggcatgcctttttgccccgtgcccgcgccgagcggggcgtgctgcactacacccgc
gtctcacccgaacaggcgcggctcgcggtggagacggccaccgaactgggacgcctcgcg
gatgaccctacgcccgcaggggagagccgcatctatctgccccatgtcttgcggaccgag
aaaaaactcgcggggctgatccgcacgctgctggccacgccgcccgctggagcggaatgg
gcggtgccggttggcgcggcgcagggtctttcagaagaacaggcgcgggtgctgcaactt
ctcgaagatcatcgcctggtggtgctgaccggtggccccggtaccggcaaaagcaccgcc
acccgggcagttgcggatctggccgagcggctggggctggaggttggcctctgcgccccg
accggcaaggcggcccggcgtctgggtgaggtgaccgggcgccctgcctccaccattcac
cgcttgctggggtatggcccggcggggttccggcacaaccacctcgaacccgcgccgtat
gacctcctgattgtggacgaggtgagcatgacgggagacgcgctcatgctctcgctgctc
gccgccgtggcgccgggggcacgggtgctgctggtgggcgacaccgatcagctccccccg
gtcgactcggggttgccgctgctcgcgattgcccagacagcccccaccgttcgcctgtcc
acggtgtaccgccaggctgccgagaatccgatcatccgcgcggcccacggcctgttgcac
ggccaggccccgtcctggggcgatccgcgtctcgacctcaccgagacggaacccgatgtg
ggtgcccgccgcgtggccctgatggtccgcgacctgggagggccggggcgggtgcaggtc
ctcacgccgatgcgcaaggggccgctgggggtcgaaacgctcaaccgccacctccaggcc
ctctttaaccccggcgagggtggtacccggattgccgacggcgaggcgcggcccggtgac
gtggtcgtgcagaccaaaaacgactatcagaacgaggtcttcaacggcaccgttggcacg
gtcctcaaggccgaggggggccgcctcaccgtggattttgacggcaatatcgttgaactg
gccggtgccgaactgttcaatctgcaactcggctatgccctgaccgttcaccgcgcacag
ggcagcgagtggccaacggtcctcggggtgctgcacgaggttcacatgccgatgctctcg
cgcaatctcgcctacaccgccctgacccgcgcccgcgaacgtttcttggccgtgggttcg
gcttccgcctgggagaaggccgccgggcggcagcgagaggaacgcaacacggcgctgctg
gagcggattcggaggcggtag

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-DGE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (23)   
   Pfam (23)   
All databases (33)   

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