KEGG   Megalodesulfovibrio gigas: DGI_1218
Entry
DGI_1218          CDS       T02851                                 
Name
(GenBank) putative ribonuclease II
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
dgg  Megalodesulfovibrio gigas
Brite
KEGG Orthology (KO) [BR:dgg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dgg03016]
    DGI_1218
Enzymes [BR:dgg01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     DGI_1218
Transfer RNA biogenesis [BR:dgg03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    DGI_1218
SSDB
Motif
Pfam: RNB DUF1485 DUF5791
Other DBs
NCBI-ProteinID: AGW13074
UniProt: T2GA93
Position
1300005..1302113
AA seq 702 aa
MILPAVQYPGPGCVVEFLHSNKPQLAIVVGESGGRLRLFTQNKRETLLPAARVLPWAGPQ
YGAALSRNELEHILEERHQVRAALEAGIDPMAIWELAQGELAQADLTWFAELLWPREEAR
DADRRAAVGRVLLACKTHFRFQPPYFEIHPQALVDARLVEQEQRAAREALQTAGERLFPL
LWNVHLGRTAPPPLPSTPEEQQLAELLRVRITNPEDQDTAPLWQQLKKGLPPEEAQLPFL
LARAWGLVPHHYNIPLDQAGYEDDAAWAAVFQDELDAWIADAGAWSATAATLDLPLASID
GETTRDIDDAFRIQALEDGGFRCVVALACPVLGYPLGGPLDEAVRRRASSLYLPEAVLHM
LPEAVGLDRFSLFAGVARPALVLDMRLDAQGMLVETTPSLAQVSVSANHTYQQAEIHMDS
SQDDPCGLRTGYALALLRRQRRLDRGALQVERSEPELVLEGQGLGRDAQVRLEHKPETPR
AQLLVSELMILVNAAAARWAAAQDVPLLHRTQDVPISAEAQGIWSRPQDIYRAMRGIGAT
GLELTPRRHATLGESMYAPVSSPLRRYVDLVNQAQLAGMLQQGRAPLGREQLEAMLPGIQ
SNAEATGRVQRFRTRYWKMEALRQAAAHGSFPAVVVEQHAAMVACALPEAQLYIRGPRRL
FGDDCHVGQRVQLTLGRIDPLHNEMHIVETAVDYGVEDVLEM
NT seq 2109 nt   +upstreamnt  +downstreamnt
ttgattttacctgccgtgcagtatcccgggccggggtgtgtggtggaatttctccacagc
aacaagccccagctcgccatcgtggtgggggaaagcggggggcggctgcggctgttcacc
cagaacaagcgagaaacgctgctgcccgcggcccgggtgttgccctgggccgggccgcag
tatggcgctgcgctttcccgcaacgagctggaacacattctggaggagcgtcatcaggtg
cgcgccgccctggaggcgggcattgatcccatggccatctgggaactggcccagggcgag
ttggcccaggcggatctgacctggttcgccgagctgctctggcccagggaagaggcccgg
gacgccgaccgccgcgctgctgtgggtcgggtgctgctggcgtgcaagacgcattttcgc
tttcagccgccgtattttgagatccatccgcaggctctggtggacgcacgcctcgtcgag
caggagcagcgcgccgcccgcgaggccctgcagaccgccggggagcggctgtttccgctg
ctctggaacgtgcatctgggcagaactgcgccgccgccgttgccctccacgcccgaggaa
cagcagctggccgaactgctgcgtgtgcgcatcaccaatcccgaggaccaggacaccgcc
cccctctggcagcagctcaaaaagggcctgccgccggaggaggcgcagttgcctttcctc
ctggccagggcctgggggctggtgccgcaccattacaacatccccctggatcaggcgggg
tatgaggacgatgccgcctgggccgcagtcttccaggacgagctggatgcctggattgcc
gacgccggggcctggagcgccaccgccgccacgctggatctgcccctggccagcatcgac
ggcgagaccacccgcgacattgacgacgccttccgcatccaggccctggaggacggcggc
ttccgctgcgtcgtggccctggcctgtccggtgctgggctatccgcttggtggtcccctg
gacgaggccgtgcgccgtcgtgcgtcctccctgtatctgcccgaagccgtgttgcacatg
ctgcccgaagccgtggggctggaccggttttccctctttgccggcgtcgcacggccggcc
ctggtgctggatatgcggctggacgcccagggtatgctggtggagaccacgcccagcctg
gcgcaggtgagcgtctctgccaatcacacctatcagcaggccgaaatccacatggacagc
agccaggacgatccctgcggcctgcgcaccggctatgccctggcgctgctcaggcggcaa
cgccggctggatcgtggcgcgctgcaggtggaacgcagcgaacccgaactggtgctggaa
gggcagggcctgggccgggacgcgcaggtgcgcctggagcacaagccggaaacgcccagg
gcccagctactggtgagcgaactgatgattctggtgaacgccgccgcggcacgctgggcg
gccgctcaggacgtaccgctgctgcaccgtacgcaggatgtgcccatcagcgccgaggcg
cagggcatctggtcccgcccgcaggatatttaccgggccatgcggggcatcggcgccacg
ggcctggagttgacgccgcggcgtcacgccaccctgggcgaatccatgtatgcgccggtg
agttcacccctgcgccggtatgtggatctggtgaatcaggcccagctggcgggcatgctg
cagcaggggcgtgcgcccctgggccgggagcagctggaggcgatgctgccgggcattcag
tccaatgccgaggccaccggccgtgtgcaacggtttcgtacccggtactggaagatggag
gccttgcgccaggccgccgcgcacgggtcgtttccggcggtggtggtggagcagcacgcg
gcgatggtcgcctgcgccctgcccgaagcgcagctgtacatccgtggcccaagacggctg
ttcggggacgattgccacgtgggccagcgcgtgcagctgaccctggggcgcattgaccct
ctgcacaacgagatgcacattgtcgagacggccgtggactacggcgtcgaggatgtgctg
gagatgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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