KEGG   Maridesulfovibrio hydrothermalis: DESAM_21694
Entry
DESAM_21694       CDS       T02428                                 
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase (PNPase)
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
dhy  Maridesulfovibrio hydrothermalis
Pathway
dhy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dhy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DESAM_21694 (pnpA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dhy03019]
    DESAM_21694 (pnpA)
   03016 Transfer RNA biogenesis [BR:dhy03016]
    DESAM_21694 (pnpA)
Enzymes [BR:dhy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     DESAM_21694 (pnpA)
Messenger RNA biogenesis [BR:dhy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     DESAM_21694 (pnpA)
Transfer RNA biogenesis [BR:dhy03016]
 Prokaryotic type
  tRNA degradation factors
   DESAM_21694 (pnpA)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2
Other DBs
NCBI-ProteinID: CCO23971
UniProt: L0REK4
Position
complement(2065428..2067656)
AA seq 742 aa
MLTPFETTSVLGQVGNLDIKLETGRMANQTNGSVWIQSGGTVVHVTAVSMATSEPRDFFP
LTCNYLEKTYAAGRIPGGYFRREVGRPSDRETLVSRLMDRPIRPMFPKAFCDEVQVIATV
LSADTNTNPDVLAMTGASAALHISDMPFNGPVAAARVGMVNNEFVLYPTYKGISEDSDLN
LIFAATRDAVIMVEGSSQFLSENTIAEALEFGHEQLGPMFDLQDALREKVGRPKVEVVEP
VKDEEVITLVTDTFAADLDKALTIPEKMTRRAAKAEVKSNAVKLIEEKFPEEPKRAKAVG
EAMAALEKKIVRDRIVNEGIRIDGRDLTTVRNLSMEVGNLPMTHGSALFRRGETSALAVC
TLGSSRDEQRFETLIGEGTKRFMLHYNFPPYCVGEARFLRAPSRREIGHGTLAERALRPV
LPSPEKFPFTMRVVSEVMDSNGSSSMASVCGTTLSLMDAGVPISAPVAGIAMGLCQEGDG
FYVLTDILGDEDALGDMDFKVAGTEEGITAIQMDIKISGIPAEVLRKALAQAKEARQLIL
DDMKQVIAEPRAELSVNAPQMEVLTINPEKIRDLIGPGGKNIKAITAETSADIDIEDSGK
VSIFAPTLESLKKTVEMVQYYDQTADLGTNYVGTVKKILEIGAIVEILPGLEGLLHISQI
DVERIESVTDVVQLGQEITVKVVEVQPNGRIRLSRKAWLMEQAGQEVDLEKFKMGGRPGG
GRRDDRRGGGPRGGRPGGGGRR
NT seq 2229 nt   +upstreamnt  +downstreamnt
atgctaacaccttttgaaaccacctcagttctcggtcaggtcgggaatctcgatatcaaa
ctcgagaccggacgcatggccaaccagactaacggtagcgtatggattcagtccggcgga
accgttgtacacgtaacagcagtaagcatggctaccagcgaacctcgggacttcttcccc
cttacctgcaactaccttgaaaaaacctacgcagccggacgcattcccggtggttacttc
cgtcgtgaagtaggccgtccttctgaccgtgaaacacttgtctcccgtctcatggaccgc
cccatccgccccatgttccccaaagctttctgcgacgaagtgcaggttatcgcaactgta
ctttccgctgacacaaacaccaaccctgatgttctggcaatgaccggagcatccgcagct
ctgcatatctccgacatgcccttcaacggtcctgttgcagcagccagagtcggcatggtg
aacaacgaatttgttctctaccccacatataaaggaatttctgaagacagcgacctcaac
ctcatctttgcagctactcgcgacgcagttatcatggttgaaggcagctcccagttcctt
tctgagaacaccattgctgaagcacttgagttcggtcacgagcagctcggacctatgttt
gaccttcaggatgcgctcagagaaaaagtaggccgtcctaaagtcgaagttgtagagcct
gtaaaagacgaagaagttatcactctggtaactgacacatttgcagctgatctagacaaa
gctctcaccatccctgaaaagatgacacgcagagctgccaaggccgaagtaaaatccaac
gctgttaagctcatcgaagaaaaatttcccgaagagcctaaaagagcaaaagctgtcggc
gaagcaatggctgctcttgaaaagaaaattgtacgtgaccgcatcgtaaatgaaggcatc
cgcattgacggacgtgacctgaccactgtgcgtaacctttccatggaagtaggcaacctg
cctatgactcacggctctgcacttttccgcagaggtgaaacttccgcacttgcagtatgc
acactcggttcctcccgtgatgagcagagatttgaaacactcatcggtgaaggaaccaag
cgtttcatgctccattacaacttccccccttactgcgtgggtgaagccagatttctgcgt
gctccctcccgccgtgaaatcggccacggaacactggctgaacgcgctctgcgccccgtt
ctgccttcccctgaaaaattccctttcactatgcgcgtagtttccgaggtcatggactct
aacggttcttcctcaatggcttccgtatgcggcacaaccctgtccctcatggacgcaggt
gtacccatcagcgcgcctgttgcgggtatcgcaatggggctttgtcaggaaggagacggc
ttctacgttcttaccgacattctcggtgatgaagatgctctcggagatatggacttcaaa
gttgctggtactgaagaaggtatcactgcaattcagatggatatcaagatcagcggcatc
cccgcagaagttctgcgcaaagcccttgctcaggctaaagaagcccgtcagctcatcctt
gatgacatgaaacaggttattgccgagcctagagctgagctttccgttaacgcacctcag
atggaagttctcaccatcaaccccgaaaagatcagagaccttatcggacccggtggtaaa
aacatcaaagctatcacagctgaaacatcagctgatatcgatatcgaagattccggtaaa
gtttccatcttcgcgcctactcttgagtctctcaagaagaccgtggaaatggttcagtac
tacgatcagacagccgatctcggtaccaactacgtaggtactgttaaaaagatccttgaa
atcggtgcaatcgttgagatcctgcccggacttgaaggtctgctgcacatctcccagatc
gatgttgaacgcatcgaaagcgtaactgacgttgtgcaactgggtcaggaaattaccgtt
aaagttgttgaagtacagcctaacggacgcattcgcctttcccgcaaagcctggctcatg
gagcaggccggacaggaagttgatcttgaaaaattcaagatgggcggacgccccggcggc
ggaagacgcgacgacagacgaggcggaggccctagaggcggacgtcccggtggtggcggt
cgcagataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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